View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_89 (Length: 270)
Name: NF20869_high_89
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_89 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 40277476 - 40277235
Alignment:
| Q |
18 |
gtattcccctctccatgatccaacaaaagcacaacgcatagtaaaagtaaattctcattaccattgtaaatctctccaaactctatccaaacaaaatata |
117 |
Q |
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| T |
40277476 |
gtattcccctttccatgatccaacaaaagcacaacgcatagtaaaagtaaattctcattaccattgtaaatctctccaaactctatccaagcaaaatata |
40277377 |
T |
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| Q |
118 |
tatttttcacttattttatatcttcttttttggcatcctaattgagctttaaagtgggtgttatttagaaattaaagagagtaattgatttaacaatttc |
217 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40277376 |
tatttttcacttattttatatcttctttttgagcatcctaattgagctttaaagtgggtgttatttagaaattaaagagagtaattgatttaacaatttc |
40277277 |
T |
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| Q |
218 |
aaccaaaaagtacacacaaaatacctattttctattagaatt |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
40277276 |
aaccaaaaagtacacacaaaatacctattttctattagaatt |
40277235 |
T |
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