View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_9 (Length: 672)
Name: NF20869_high_9
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 583; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 17 - 664
Target Start/End: Complemental strand, 1893197 - 1892550
Alignment:
| Q |
17 |
aggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggttacatagacagcccccttcatgttcaatgaccatgcaatagctg |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1893197 |
aggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggttacatagacagcccccttcatgttcaatgaccatgcaatagctg |
1893098 |
T |
|
| Q |
117 |
tactgctgataaatttcccaaatataccctggaaaaagaaatgtgacatcaataaactacactatttttggtcaaagtacatgtttttggtcaaagtgca |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1893097 |
tactgctgataaatttcccaaatatgccctggaaaaagaaatgtgacatcaataaactacactatttttggtcaaagtacatgtttttggtcaaagtgca |
1892998 |
T |
|
| Q |
217 |
gcaatagtatcttacagaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacaaatgtt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1892997 |
gcaatagtatcttacagaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacaactgtt |
1892898 |
T |
|
| Q |
317 |
gagatgatggtggcagttatggtgtataacaagactaaagttacttcatctgggaactctttcaagatatgcacctgtgaaatgaatataggattatgaa |
416 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1892897 |
gatatgatggtggcagtaatggtgtataacaagactaaagttacttcgtcagggaactctttcaagatatgcacctgtgaaatgaatataggattatgaa |
1892798 |
T |
|
| Q |
417 |
ctgaaactttttagaattatannnnnnnaagctctcatttatgaaatataaatgatgagagaattgaggaagtcaattttcacattctggcaaatattat |
516 |
Q |
| |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
1892797 |
ctgaaactttttagaattaaaattttttaagctctcatttatgaaatataaatgatgagagaattgaggtagtcaattttcacattctggcaaatattat |
1892698 |
T |
|
| Q |
517 |
gtagcaccgacgtagacacgtgtggttacatttaggttgaaaataaattgaaaatcaaaccatcaaattgaaccaaactgaactgtgactgacagttcac |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1892697 |
gtagcaccgacgtagacacgtgtggttacatttaggttgaaaataaattgaaaaccaaaccatcaaattgaaccaaactgaactgtgactgacagttcac |
1892598 |
T |
|
| Q |
617 |
aaattgaacaggttcagcttgtgaactatctgtaacgattcagttctt |
664 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
1892597 |
aaattgaacaggttcagctcgtgaactatctgtaacaattcagttctt |
1892550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 223 - 418
Target Start/End: Complemental strand, 1880847 - 1880652
Alignment:
| Q |
223 |
gtatcttacagaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacaaatgttgagatg |
322 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
1880847 |
gtatcttacagaagaaactatagagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacaactgttgatatg |
1880748 |
T |
|
| Q |
323 |
atggtggcagttatggtgtataacaagactaaagttacttcatctgggaactctttcaagatatgcacctgtgaaatgaatataggattatgaact |
418 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1880747 |
atggtagcagttatggtgtataacaagactaaagttacttcatctgagaactctttcaagatatgcacctgtgaaatgaatataggattaggaact |
1880652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 223 - 402
Target Start/End: Complemental strand, 1913695 - 1913516
Alignment:
| Q |
223 |
gtatcttacagaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacaaatgttgagatg |
322 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| ||| || ||| |
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| T |
1913695 |
gtatcttacagaagaaacaatggagataagtgagagatttagtcctattatccaagcacttgaatttggaactgataacaaagctacaactgtagatatg |
1913596 |
T |
|
| Q |
323 |
atggtggcagttatggtgtataacaagactaaagttacttcatctgggaactctttcaagatatgcacctgtgaaatgaa |
402 |
Q |
| |
|
|| ||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
1913595 |
attgtggcagttatggaatatatcaagactaaagttagttcatctgggaactctttcaagatatgtacctgtgaaatgaa |
1913516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 223 - 407
Target Start/End: Complemental strand, 1888143 - 1887959
Alignment:
| Q |
223 |
gtatcttacagaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacaaatgttgagatg |
322 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | |
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|
| T |
1888143 |
gtatcttacggaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacaactgttgataag |
1888044 |
T |
|
| Q |
323 |
atggtggcagttatggtgtataacaagactaaagttacttcatctgggaactctttcaagatatgcacctgtgaaatgaatatag |
407 |
Q |
| |
|
||||||||||| |||| ||| | ||||||||| ||| ||||||||||||||||||||| | ||| |||| |||||||||||||| |
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|
| T |
1888043 |
atggtggcagtaatggagtaaagcaagactaatgttggttcatctgggaactctttcaaaacatgtacctatgaaatgaatatag |
1887959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 222 - 409
Target Start/End: Complemental strand, 1898321 - 1898134
Alignment:
| Q |
222 |
agtatcttacagaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacaaatgttgagat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | | || || |
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|
| T |
1898321 |
agtatcttacagaagaaacaatggagataagtgagagattcagtcctattttccaagcacttgcatttggaactgataacaaagctacaactatagatat |
1898222 |
T |
|
| Q |
322 |
gatggtggcagttatggtgtataacaagactaaagttacttcatctgggaactctttcaagatatgcacctgtgaaatgaatatagga |
409 |
Q |
| |
|
||||||||||||| ||||||| | |||| || ||||| |||||||||||||||||||| |||||| |||||||||||||||| |||| |
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|
| T |
1898221 |
gatggtggcagttgtggtgtaaagcaaggttagagttagttcatctgggaactctttcatgatatgtacctgtgaaatgaataaagga |
1898134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 224 - 409
Target Start/End: Complemental strand, 1903619 - 1903434
Alignment:
| Q |
224 |
tatcttacagaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacaaatgttgagatga |
323 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||||||| | ||||||||||||||||||||| ||||||||||||||||| ||||||| | | || |||| |
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|
| T |
1903619 |
tatcttacagaacaaacaacggagacgagtgagagattcaatcctattttccaagcacttgcttttggaactgataacaaagctacaactatagatatga |
1903520 |
T |
|
| Q |
324 |
tggtggcagttatggtgtataacaagactaaagttacttcatctgggaactctttcaagatatgcacctgtgaaatgaatatagga |
409 |
Q |
| |
|
||||||||||| ||| ||| ||||| | || ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| |
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|
| T |
1903519 |
tggtggcagttgtggagtaaaacaatattatagttagttcatctgggaactctttcaagatatgtacctgtgaaatgaataaagga |
1903434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 224 - 409
Target Start/End: Complemental strand, 1907852 - 1907667
Alignment:
| Q |
224 |
tatcttacagaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacaaatgttgagatga |
323 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||||||| | ||||||||||||||||||||| ||||||||||||||||| ||||||| | | || |||| |
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|
| T |
1907852 |
tatcttacagaacaaacaacggagacgagtgagagattcaatcctattttccaagcacttgcttttggaactgataacaaagctacaactatagatatga |
1907753 |
T |
|
| Q |
324 |
tggtggcagttatggtgtataacaagactaaagttacttcatctgggaactctttcaagatatgcacctgtgaaatgaatatagga |
409 |
Q |
| |
|
||||||||||| ||| ||| ||||| | || ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
1907752 |
tggtggcagttgtggagtaaaacaatattatagttagttcatctgggaactctttcaagatatgtacctgtgaaatgaataaagga |
1907667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 1904114 - 1904041
Alignment:
| Q |
17 |
aggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggttacatagacagccccctt |
90 |
Q |
| |
|
||||||||||| || |||||| |||||||||||||||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
1904114 |
aggaatataacacccaagccagcagaaataacaatttgaagtggcttgaatgaggttacatagactgccccctt |
1904041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 1908347 - 1908274
Alignment:
| Q |
17 |
aggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggttacatagacagccccctt |
90 |
Q |
| |
|
||||||||||| || |||||| |||||||||||||||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
1908347 |
aggaatataacacccaagccagcagaaataacaatttgaagtggcttgaatgaggttacatagactgccccctt |
1908274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 1914227 - 1914154
Alignment:
| Q |
17 |
aggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggttacatagacagccccctt |
90 |
Q |
| |
|
|||||||||||||| || | |||||| ||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
1914227 |
aggaatataactcccaaccaaacagagataacaatttgcagtggcttgaatgaggttacatagacagccccctt |
1914154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 1898903 - 1898836
Alignment:
| Q |
23 |
ataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggttacatagacagccccctt |
90 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
1898903 |
ataacacctaagccagcagaaataacaatttgaagtggcttgaatgaggttacatagactgccccctt |
1898836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 1888347 - 1888274
Alignment:
| Q |
17 |
aggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggttacatagacagccccctt |
90 |
Q |
| |
|
||||||||||| | ||| ||||||||||||||||||| || ||||||||||| |||||||||||||| ||||| |
|
|
| T |
1888347 |
aggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatgttacatagacagctccctt |
1888274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 1881047 - 1880903
Alignment:
| Q |
17 |
aggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggttacatagacagcccccttcatgttcaatgaccatgcaatagctg |
116 |
Q |
| |
|
||||||||||| | ||| ||||||||| |||||||| || ||||||||||| |||||||||||||| ||||| | | ||||||||||||| | || |
|
|
| T |
1881047 |
aggaatataacagccaaggcaacagaaaacacaatttggagtggcttgaatgatgttacatagacagctccctttaagcgcaatgaccatgcataaacta |
1880948 |
T |
|
| Q |
117 |
tactgctgataaatttcccaaatataccctggaaaaagaaatgtg |
161 |
Q |
| |
|
||||||| || ||||| ||||| || |||| |||| | ||||||| |
|
|
| T |
1880947 |
tactgcttattaattttccaaaaatcccctagaaatataaatgtg |
1880903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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