View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_90 (Length: 268)
Name: NF20869_high_90
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_90 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 32 - 267
Target Start/End: Original strand, 36154211 - 36154446
Alignment:
| Q |
32 |
tatatggatgcagtgtctgaatgatcattcacctttcacttttctcctcaatttgacgagctagagaagccaacctagagaagtcaattgccgaattatc |
131 |
Q |
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| T |
36154211 |
tatatggatgcagtttctgaatgatcattcacctatcacttttctcctcaatttgacgagctagagaagccaacctagagaagtcaaatgccgaattatc |
36154310 |
T |
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| Q |
132 |
actgtaaatatagacaaaatagttagataatcaacttgaaaatggaaaaccctaaaatgagcagaaacattacacatcaagtgaaatctcagtaaggatc |
231 |
Q |
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| T |
36154311 |
actgtaaatatagacaaaatagttagataatcaacttgaaaatggaaaaccctaaaatgagcagaaacattacacatcaagtgaaatctcagtaagtatc |
36154410 |
T |
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| Q |
232 |
atgtcaacatcagcaaaatatgtttctctctgctgc |
267 |
Q |
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| T |
36154411 |
atgtcaacatcagcaaaatatgtttctatctgctgc |
36154446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 62 - 267
Target Start/End: Original strand, 36159971 - 36160176
Alignment:
| Q |
62 |
acctttcacttttctcctcaatttgacgagctagagaagccaacctagagaagtcaattgccgaattatcactgtaaatatagacaaaatagttagataa |
161 |
Q |
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| T |
36159971 |
acctttcacttttatcctcaacttgacgagcaagagaagcaaacttagagaagtcaaatgctgaattagcactgtagatataaacaaaatagttagataa |
36160070 |
T |
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| Q |
162 |
tcaacttgaaaatggaaaaccctaaaatgagcagaaacattacacatcaagtgaaatctcagtaaggatcatgtcaacatcagcaaaatatgtttctctc |
261 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
36160071 |
tcagcttgaaaatggaaaaccctaaaatgagcagaaacattacaaatcaagtgaaatctcagcaaggatcatgtcaacatcagcaaaatatgtttctatc |
36160170 |
T |
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| Q |
262 |
tgctgc |
267 |
Q |
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| T |
36160171 |
tgctgc |
36160176 |
T |
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