View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_high_91 (Length: 266)
Name: NF20869_high_91
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_high_91 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 35073018 - 35073238
Alignment:
| Q |
16 |
cagaattctcctgagggaatgaagaagcagaaagtgcagaattggtaaaaggaaaatccttgaaggggtcccaaacgtcaagggagaatggatcgaaaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
35073018 |
cagaattctcctgagggaatgaagaagcagaaagtgaagaattggtgaaaggaaaatccttgaatgggtcccacacgtcaagggagaatggatcgaaaac |
35073117 |
T |
|
| Q |
116 |
gttgctccttcggcctcggccaccaaagaaacttggaatcaacgacattgttctgctgtgttgggtttgttgtgaattgagaattctgaaaatcagtagc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
35073118 |
gttgctccttcggcctcggccaccaaagaaacttggaatcagcgacattgttctgctgtgttgtgtttgatgtgaattgagaattctgaaaatcagtagc |
35073217 |
T |
|
| Q |
216 |
gcttttcagttgttttaattc |
236 |
Q |
| |
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|||||||||||||||| |||| |
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| T |
35073218 |
gcttttcagttgttttcattc |
35073238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 35106842 - 35106695
Alignment:
| Q |
16 |
cagaattctcctgagggaatgaagaagcagaaagtgcagaattggtaaaaggaaaatccttgaaggggtcccaaacgtcaagggagaatggatcgaaaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35106842 |
cagaattctcctgagggaatgaagaagcagaaagtgaagaattggtgaaaggaaaatccttgaatgggtcccaaacgtcaagggagaatggatcgaaaac |
35106743 |
T |
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| Q |
116 |
gttgctccttcggcctcggccaccaaagaaacttggaatcaacgacat |
163 |
Q |
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| T |
35106742 |
gttgctccttcggcctcggccaccaaagaaacttggaatcaacgacat |
35106695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 36296791 - 36296933
Alignment:
| Q |
16 |
cagaattctcctgagggaatgaagaagcagaaagtgcagaattggtaaaaggaaaatccttgaaggggtcccaaacgtcaagggagaatggatcgaaaac |
115 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||| ||||| |||||||| ||||||||||||||||||||||| |
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| T |
36296791 |
cagaattctcctgaggaaatgaagaagcagaaagtgcagaattgggaaatgaaaaatccttaaagggatcccaaacatcaagggagaatggatcgaaaac |
36296890 |
T |
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| Q |
116 |
gttgctccttcggcctcggccaccaaagaaacttggaatcaacgacatt |
164 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
36296891 |
gttgctcct------tcggccaccaaagaaacttggaatcagcgacatt |
36296933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 35097664 - 35097525
Alignment:
| Q |
16 |
cagaattctcctgagggaatgaagaagcagaaagtgcagaattggtaaaaggaaaatccttgaaggggtcccaaacgtcaagggagaatggatcgaaaac |
115 |
Q |
| |
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|||||||||| |||||||||||| ||||||||| |||||||| || ||||||||||||||||| |||||||||||||| ||||||||||| ||| |
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| T |
35097664 |
cagaattctcacgagggaatgaag---cagaaagtgaagaattggagaatggaaaatccttgaagggatcccaaacgtcaagagagaatggatcaaaagt |
35097568 |
T |
|
| Q |
116 |
gttgctccttcggcctcggccaccaaagaaacttggaatcaacgacatt |
164 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35097567 |
gttgctccttc------ggccaccaaagaaacttggaatcaacgacatt |
35097525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 24041074 - 24041260
Alignment:
| Q |
16 |
cagaattctcctgagggaatgaagaagcagaaagtgcagaattggtaaaaggaaaatccttgaaggggtcccaaacgtcaagggagaatggatcgaaaac |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
24041074 |
cagaattctcctgagggaatgaagaagcagaaagtgcagaattggttaaaggaaaatccttgaaggggtcccaaacgtcaagggaaaatggatcaaaagt |
24041173 |
T |
|
| Q |
116 |
gttgctccttcggcctcggccaccaaagaaacttggaatcaacgacattgttctgctgtgttgggtttgttgtgaattgagaattctgaaaat |
208 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
24041174 |
gttgctcct------tcggccaccaaagaaacttggaatcagcgacattgttctgctgtgttgtgtttgatgtgaattgagaattctgaaaat |
24041260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 24014517 - 24014659
Alignment:
| Q |
16 |
cagaattctcctgagggaatgaagaagcagaaagtgcagaattggtaaaaggaaaatccttgaaggggtcccaaacgtcaagggagaatggatcgaaaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24014517 |
cagaattctcctgagggaatgaagaagcagaaagtgcagaattggttaaaggaaaatccttgaaggggtcccaaacgtcaagggagaatggatcgaaaac |
24014616 |
T |
|
| Q |
116 |
gttgctccttcggcctcggccaccaaagaaacttggaatcaacgacatt |
164 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24014617 |
gttgctcct------tcggccaccaaagaaacttggaatcaacgacatt |
24014659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 164
Target Start/End: Complemental strand, 3123035 - 3122916
Alignment:
| Q |
39 |
gaagcagaaagtgcagaattggtaaaaggaaaatccttgaaggggtcccaaacgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccac |
138 |
Q |
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|||||||||| | |||| |||| || ||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| | |||||||| |
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| T |
3123035 |
gaagcagaaactacagagttggagaatggaaaatccttgaaggggtcccaaacgtcgaggaagaagggatcgaaaacgttgctcat------tcggccac |
3122942 |
T |
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| Q |
139 |
caaagaaacttggaatcaacgacatt |
164 |
Q |
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|||||||||||||||||| ||||||| |
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| T |
3122941 |
caaagaaacttggaatcagcgacatt |
3122916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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