View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20869_low_1 (Length: 860)
Name: NF20869_low_1
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 15 - 582
Target Start/End: Complemental strand, 37458462 - 37457897
Alignment:
| Q |
15 |
aaaaacaagaggtgttgccttctaacattaacatgtgaatcactctctgactaaaacatgaaacccttctcttgctgcaacaaccgacttgcaaaaccca |
114 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37458462 |
aaaaacaagaggtgttgtcttctaacattaacatgtgaatcactctctgactaaaacatgaaacccttctcttgctgcaacaaccgacttgcaaaacaca |
37458363 |
T |
|
| Q |
115 |
attcacgtagaagctctcacgtgtgaatcactctgttactgcatattgaatccctttgtgtttgtaattgttaaaacattattctggtgtattgagtttc |
214 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | |
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| T |
37458362 |
attcacgtagaagctctcacgtttgaatcactctgttactgcatattgaatccctttttgttt--aattgttaaaacattattctggtgtattgagttac |
37458265 |
T |
|
| Q |
215 |
tttgcgtccacattgaacccctctacgtatgactaagacattcttctacggttgaactgttccgcagctgaacttcccctttctaactattgtaagtcac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37458264 |
tttgcgtccacattgaacccctctacgtatgactaagacattcttctacggttgaactgttccgcagctgaacttcccctttctaactattgtaagtcac |
37458165 |
T |
|
| Q |
315 |
taaaacccttcttgtctataccttttctcatagacaacgttttgtcgtctactttgattaatttcaaccttttcccatttataagtttagctgatgtata |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37458164 |
taaaacccttcttgtctataccttttctcatagacaacgttttgtcgtctactttgattaatttcaaccttttcccatttataagtttagctgatgtata |
37458065 |
T |
|
| Q |
415 |
ccatttcctagataatagcttttggaggttgaataggaaagaaagatccttgctttactaaagatcaaagttatttcacaatatttttcaagctacttgt |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37458064 |
ccatttcctagataatagcttttggaggttgaataggaaagaaagatccttgctttactaaagatcaaagttatttcacaatatttttcaagctacttgt |
37457965 |
T |
|
| Q |
515 |
gtaaaaaacagtagaattgattcttttaagttctacccatatgatgcagagagatattaccctataca |
582 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37457964 |
gtaaaaaacagtagaattgattcttttaagttctacccatatgatgcagagagatattaccctataca |
37457897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 583 - 855
Target Start/End: Complemental strand, 37457791 - 37457519
Alignment:
| Q |
583 |
aactcccaagagactgaagtatcatcgtttatatcattatcttctacaccacttcttgccgcacctcatttggaagcggtaccgacttcactagtcctag |
682 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37457791 |
aactcccaagagactgaagtatcatcgtttatatcattatcttctacaccacttcttgccgcacctcatttggaagcggtaccgacttcactagtcctag |
37457692 |
T |
|
| Q |
683 |
ccatttctttgtgctcacagtcagccatggaatactgatccttttctttaaagtagaaggaactgacgtaaagcattaacacaaacaaataagttaaata |
782 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37457691 |
ccatttctttgtgctcacagtcagccatggaatactgatccttttctttaaagtagaaggaactgacgtaaagcattaacacaaacaaataagttaaata |
37457592 |
T |
|
| Q |
783 |
aataaccttgagtcataatttggtcatgtaattttcatcagtgtgcaaatgtcttgacctcatttggtctgtg |
855 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37457591 |
aataaccttgagtcataatttggtcatgtaattttcatcagtgtgcaaatgtcttgacctcatttggtctgtg |
37457519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 4e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 56 - 311
Target Start/End: Original strand, 11989694 - 11989949
Alignment:
| Q |
56 |
actctctgactaaaacatgaaacccttctcttgctgcaacaaccgacttgcaaaacccaattcacgtagaagctctcacgtgtgaatcactctgttactg |
155 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||| | ||||||||||| || | |||| |||||||| |||||||||||||| ||| |
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|
| T |
11989694 |
actctcttgctaaaacatgaaatccttctcttgctgcaacaaccctcacgcaaaacccaactcgcaaagaaactctcacgcatgaatcactctgttgctg |
11989793 |
T |
|
| Q |
156 |
catattgaatccctttgtgtttgtaattgttaaaacattattctggtgtattgagtttctttgcgtccacattgaacccctctacgtatgactaagacat |
255 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||| || |||||||||| || || ||||||||||||| |||||| | || |||| |||| | |
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|
| T |
11989794 |
catattgaattcctttgtgtttgtaatttttaaaacattgtttcggtgtattgaattcctctgcgtccacattgtaccccttttagtcagactgagacgt |
11989893 |
T |
|
| Q |
256 |
tcttctacggttgaactgttccgcagctgaacttcccctttctaactattgtaagt |
311 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| ||||| |||||||||||| |
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|
| T |
11989894 |
tcttctaccattgaactgttctgcagctgaacttcccttttctcactattgtaagt |
11989949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 65 - 486
Target Start/End: Original strand, 8570445 - 8570859
Alignment:
| Q |
65 |
ctaaaacatgaaacccttctcttgctgcaacaaccgacttgcaaaacccaattcacgtagaagctctca-cgtgtgaatcactctgttactgcatattga |
163 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||| | | ||||||| || ||| | |||| |||| | |||||||||||||| |||| |||||||||| |
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|
| T |
8570445 |
ctaaaacatgaaacacttctctcgctacaacaaccctcattcaaaacctaactcatgaagaaactctaaacgtgtgaatcactcagttagtgcatattga |
8570544 |
T |
|
| Q |
164 |
atccctttgtgtttgtaattgttaaaacattattctggtgtattgagtttctttgcgtccacattgaacccctctacgtatgactaagacattcttctac |
263 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||| |||||||||| || || ||||| ||| ||| |||| ||||||||| |
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| T |
8570545 |
atccctctgtatttgtaattgttaaaacattgttccggtgtattgaattcctctgcgt--------------------tat-actgagacgttcttctac |
8570623 |
T |
|
| Q |
264 |
ggttgaactgttccgcagctgaacttcccctttctaactattgtaagtcactaaaacccttcttgtctataccttttctcatagacaacgttttgtcgtc |
363 |
Q |
| |
|
|||||||||| ||||| ||| |||||| ||||| |||||| |||||| ||||||||| |||||| |||||||||||||||| | |||| |||||||| |
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|
| T |
8570624 |
tattgaactgtttcgcagttgagcttcccttttctcactattttaagtctctaaaacccgtcttgtttataccttttctcatataaaacgctttgtcgtt |
8570723 |
T |
|
| Q |
364 |
tactttgattaatttcaacctt-------------ttccca-tttataagtttagctgatgtataccatttcctagataatagcttttggaggttgaata |
449 |
Q |
| |
|
||||||||||||||| |||||| || ||| |||||| |||||||| ||| |||||||| |||| | |||||| ||||||||||||| |
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|
| T |
8570724 |
tactttgattaatttaaaccttgctagtttgtttattgccagtttataggtttagctagtgtgtaccatttgctagtttatagctgttggaggttgaatg |
8570823 |
T |
|
| Q |
450 |
ggaaagaaagatccttgctttactaaagatcaaagtt |
486 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||| |
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|
| T |
8570824 |
ggaaagaaagattcttgc-ttactaaagatcaaagtt |
8570859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 73 - 209
Target Start/End: Original strand, 29448064 - 29448200
Alignment:
| Q |
73 |
tgaaacccttctcttgctgcaacaaccgacttgcaaaacccaattcacgtagaagctctcacgtgtgaatcactctgttactgcatattgaatccctttg |
172 |
Q |
| |
|
|||||||||||||| |||||| |||| | ||||||||||| ||| |||||| |||||||||| |||||||||||| |||| | ||||||||||| || |
|
|
| T |
29448064 |
tgaaacccttctctccctgcaaaaaccctcacgcaaaacccaactcatgtagaaactctcacgtgagaatcactctgtcactgaaaattgaatccctatg |
29448163 |
T |
|
| Q |
173 |
tgtttgtaattgttaaaacattattctggtgtattga |
209 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||||||||| |
|
|
| T |
29448164 |
tgttggtaattgttaaaacattgttccggtgtattga |
29448200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 29455402 - 29455511
Alignment:
| Q |
106 |
caaaacccaattcacgtagaagctctcacgtgtgaatcactctgttactgcatattgaatccctttgtgtttgtaattgttaaaacattattctggtgta |
205 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| || |||||| |
|
|
| T |
29455402 |
caaaacccaactcacg-agaaactctcacgtgagaatc--tctgttactgcaaattgaatccctatgtgtttgtaattgttaaaacattaatccggtgta |
29455498 |
T |
|
| Q |
206 |
ttgagtttctttg |
218 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
29455499 |
ttgaattcctttg |
29455511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 257 - 378
Target Start/End: Original strand, 29455529 - 29455650
Alignment:
| Q |
257 |
cttctacggttgaactgttccgcagctgaacttcccctttctaactattgtaagtcactaaaacccttcttgtctataccttttctcatagacaacgttt |
356 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||| || ||||| | ||||| ||||| |||||| ||||||||| |||||||||||||||| | || || | |
|
|
| T |
29455529 |
cttctactgttgaactgttacacagctgaactttccttttctcaatattgcaagtctctaaaatccttcttgtttataccttttctcataaaaaatgtgt |
29455628 |
T |
|
| Q |
357 |
tgtcgtctactttgattaattt |
378 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
29455629 |
tgtcctctactttgattaattt |
29455650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 475 - 521
Target Start/End: Complemental strand, 23247455 - 23247409
Alignment:
| Q |
475 |
aagatcaaagttatttcacaatatttttcaagctacttgtgtaaaaa |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
23247455 |
aagatcaaagttatttcacaatatttttcaagctacttatgtcaaaa |
23247409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 394 - 466
Target Start/End: Original strand, 29455680 - 29455752
Alignment:
| Q |
394 |
tataagtttagctgatgtataccatttcctagataatagcttttggaggttgaataggaaagaaagatccttg |
466 |
Q |
| |
|
|||| ||||| ||||||||||||||| |||| | |||||||||| ||||||||| |||||| ||||| |||| |
|
|
| T |
29455680 |
tatatgtttaattgatgtataccatttgctagtttatagcttttgaaggttgaatgggaaaggaagatacttg |
29455752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 475 - 521
Target Start/End: Original strand, 18748349 - 18748395
Alignment:
| Q |
475 |
aagatcaaagttatttcacaatatttttcaagctacttgtgtaaaaa |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18748349 |
aagatcaaagttatttcacaatatttttcaagctacttgtgtcaaaa |
18748395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 475 - 521
Target Start/End: Complemental strand, 24252293 - 24252247
Alignment:
| Q |
475 |
aagatcaaagttatttcacaatatttttcaagctacttgtgtaaaaa |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
24252293 |
aagatcaaagttatttcacaatatttttcaagctatttgtgtcaaaa |
24252247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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