View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_102 (Length: 250)
Name: NF20869_low_102
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_102 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 45354468 - 45354708
Alignment:
| Q |
1 |
aaaacacagatgaaacatgatgatcaaaataaaataagaagaaaacgaaagtatcttagcagcttctaagagcnnnnnnncataaagtcttacagccaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45354468 |
aaaacacagatgaaacatgatgatcaaaataaaataagaagaaaacgaaagtatcttagcagcttctaagagctttttttcataaagtcttacagccaag |
45354567 |
T |
|
| Q |
101 |
tgtttcacttccaaggatcttgtcgccatcaaccaactagaaaaaagaagttcccatccatacatcttcaaagtgcgaatataggtcaaaagttctccgg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45354568 |
tgtttcacttccaaggatcttgtcgccatcaaccaactagaaaaaagaagttcccatccatacatcttcaaagtgcgaatataggtcaaaagttctccgg |
45354667 |
T |
|
| Q |
201 |
ttctacgaatcctggaagaagcataatattagtagtattat |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45354668 |
ttctacgaatcctggaagaagcataatattagtagtattat |
45354708 |
T |
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