View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_103 (Length: 250)
Name: NF20869_low_103
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_103 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 26146537 - 26146768
Alignment:
| Q |
17 |
ggataatcgagttgttttctggacttacattgtcgtgttccgagttgtttggtgtatatctgtttttggacacattcatcttacgacctaacttttgaaa |
116 |
Q |
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| T |
26146537 |
ggataatcgagttgttttttggacttacattgtcgtgttccgaattgttcggtgtatatatgattttggacacattcatcttacgacctaacttttgaaa |
26146636 |
T |
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| Q |
117 |
gtgtggtcaaaaactattaaacaacattgaggttttaaaaacaaatccaagatatgagatgggagttggtgtcgagtattcataaatagatnnnnnnntt |
216 |
Q |
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| T |
26146637 |
gtgtggtccaaaactattaaaaaacattgaggttttaaaaacaaatccaagatatgagatgggagttggtgtcgagtattcttaaatagatgaaaaaatt |
26146736 |
T |
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| Q |
217 |
agacgttaaacaatatatatgtaagaagaatcat |
250 |
Q |
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| T |
26146737 |
agacgttaaaca--atatatgtgagaagaatcat |
26146768 |
T |
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