View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_104 (Length: 249)
Name: NF20869_low_104
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_104 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 228
Target Start/End: Original strand, 8490696 - 8490915
Alignment:
| Q |
9 |
tcgaagaatatacatcaaaacggaatcagttttctaaaaagtgttgatggaaaggtagctctcaaaattgaatgaacatttatgattcccttatgtcctt |
108 |
Q |
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| T |
8490696 |
tcgaagaatgtacatcaaaacggaatcggttttctaaaaagtgttgatggaaaggtagctctcaaaattgaatgaacatttatgattcccttatgtcctt |
8490795 |
T |
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| Q |
109 |
caccaaagnnnnnnnngggacgcccatatgcttaaatgtcaatacatataccttatattttatctcatgtatccnnnnnnntatcacacaannnnnnnat |
208 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
8490796 |
caccaaagaaaaaaaagggatgcccatatgcttaaatgtcaatacatataccttatattttatctcatgtatccaaaaaaatatcacacaatttttttat |
8490895 |
T |
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| Q |
209 |
aactaaaaacaacaatcatt |
228 |
Q |
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|||||||||||||||||||| |
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| T |
8490896 |
aactaaaaacaacaatcatt |
8490915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 8490427 - 8490529
Alignment:
| Q |
12 |
aagaatatacatcaaaacggaatcagttttctaaaaagtgttgatggaaaggtagctctcaaaattgaatgaacatttatgattcccttatgtccttcac |
111 |
Q |
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|||||| |||||| | |||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| | |||||||||||||||| |
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| T |
8490427 |
aagaatgtacatccagacggaatcagttttctaaaaagtgttgagggagaggtagctctaaaaattgaatgaacatttatggtacccttatgtccttcac |
8490526 |
T |
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| Q |
112 |
caa |
114 |
Q |
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||| |
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| T |
8490527 |
caa |
8490529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 8489909 - 8489962
Alignment:
| Q |
62 |
ggtagctctcaaaattgaatgaacatttatgattcccttatgtccttcaccaaa |
115 |
Q |
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||||||||||| |||||||| |||||||||||| || ||||||||||||||||| |
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| T |
8489909 |
ggtagctctcacaattgaattaacatttatgatgccgttatgtccttcaccaaa |
8489962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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