View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_106 (Length: 248)
Name: NF20869_low_106
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_106 |
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| [»] scaffold0860 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 17031684 - 17031928
Alignment:
| Q |
1 |
tgatgtgtatcaaaatattattgtgacattcttgacagttagagttaaatattgcaaacacaatgaatatgttaaacattattttggaactaaaaattgg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17031684 |
tgatgtgtatcaaaatattattgtgacattcttgacagatagagttaaatattgcaaacacaatgaatatgttaaacattattttggcactaaaaattgg |
17031783 |
T |
|
| Q |
101 |
gaatattgagtcaaaaattatnnnnnnnntatatatatcattttagagacggaacgtcaatttttctctgtagagaccgaatagtagtaaatagataagg |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
17031784 |
gaatattgagtcaaaaattat--aaaaaatatatatatcattttagagacgaaacgtcaatttttctttgtagagaccgaatagtagtaaatagagaagg |
17031881 |
T |
|
| Q |
201 |
agattgatacctttacgacaaaacttagagacggtagttttcatctc |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17031882 |
agattgatacctttacgacaaaacttagagacggtagttttcatctc |
17031928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 17562120 - 17562364
Alignment:
| Q |
1 |
tgatgtgtatcaaaatattattgtgacattcttgacagttagagttaaatattgcaaacacaatgaatatgttaaacattattttggaactaaaaattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17562120 |
tgatgtgtatcaaaatattattgtgacattcttgacagatagagttaaatattgcaaacacaatgaatatgttaaacattattttggcactaaaaattgg |
17562219 |
T |
|
| Q |
101 |
gaatattgagtcaaaaattatnnnnnnnntatatatatcattttagagacggaacgtcaatttttctctgtagagaccgaatagtagtaaatagataagg |
200 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
17562220 |
gaatattgagtcaaaaattat--aaaaaatatatatatcattttagagacgaaacgtcaatttttctttgtagagaccgaatagtagtaaatagagaagg |
17562317 |
T |
|
| Q |
201 |
agattgatacctttacgacaaaacttagagacggtagttttcatctc |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17562318 |
agattgatacctttacgacaaaacttagagacggtagttttcatctc |
17562364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 17030902 - 17030796
Alignment:
| Q |
8 |
tatcaaaatattattgtgacattcttgacagttagagttaaatattgcaaacacaatgaatatgttaaacattattttggaactaaaaattgggaatatt |
107 |
Q |
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|
||||||||||||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
17030902 |
tatcaaaatattattatgacattcctgagagttagagttaaatatagcaaacacaatgaatatgttaaacattattttggcactaaaaattaggaatatt |
17030803 |
T |
|
| Q |
108 |
gagtcaa |
114 |
Q |
| |
|
||||||| |
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|
| T |
17030802 |
gagtcaa |
17030796 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 17561338 - 17561232
Alignment:
| Q |
8 |
tatcaaaatattattgtgacattcttgacagttagagttaaatattgcaaacacaatgaatatgttaaacattattttggaactaaaaattgggaatatt |
107 |
Q |
| |
|
||||||||||||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
17561338 |
tatcaaaatattattatgacattcctgagagttagagttaaatatagcaaacacaatgaatatgttaaacattattttggcactaaaaattaggaatatt |
17561239 |
T |
|
| Q |
108 |
gagtcaa |
114 |
Q |
| |
|
||||||| |
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| T |
17561238 |
gagtcaa |
17561232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 19946654 - 19946696
Alignment:
| Q |
1 |
tgatgtgtatcaaaatattattgtgacattcttgacagttaga |
43 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||| ||||||| |
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|
| T |
19946654 |
tgatgtttatcaaaatataattgtgacattcttgatagttaga |
19946696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 7471438 - 7471326
Alignment:
| Q |
1 |
tgatgtgtatcaaaatattattgtgacattcttgacagttagagttaaatattgcaaacacaatgaatatgttaaacattattttggaactaaaaattgg |
100 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| |||| ||||||||| | ||||||||||||||||| ||||||||| |||| | |||||| | || |
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| T |
7471438 |
tgatgggtatcaaaatattattg--acattcttgaaagtttgagttaaatgtagcaaacacaatgaatattttaaacattgttttagcactaaacaatga |
7471341 |
T |
|
| Q |
101 |
gaatattgagtcaaa |
115 |
Q |
| |
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||||||||||||||| |
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| T |
7471340 |
gaatattgagtcaaa |
7471326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 13532083 - 13531971
Alignment:
| Q |
1 |
tgatgtgtatcaaaatattattgtgacattcttgacagttagagttaaatattgcaaacacaatgaatatgttaaacattattttggaactaaaaattgg |
100 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| |||| ||||||||| | ||||||||||| ||||| ||||||||| |||| | | |||| | || |
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|
| T |
13532083 |
tgatgggtatcaaaatattattg--acattcttgaaagtttgagttaaatgtagcaaacacaataaatattttaaacattgttttagcaataaacagtga |
13531986 |
T |
|
| Q |
101 |
gaatattgagtcaaa |
115 |
Q |
| |
|
|||||||||||||| |
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|
| T |
13531985 |
caatattgagtcaaa |
13531971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 13408308 - 13408414
Alignment:
| Q |
7 |
gtatcaaaatattattgtgacattcttgacagttagagttaaatattgcaaacacaatgaatatgttaaacattattttggaactaaaaattgggaatat |
106 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| ||||||||| | ||| |||| |||||||| ||||||||| |||| | |||||| | || ||||| |
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|
| T |
13408308 |
gtatcaaaatattattgg--cattcttgaaagtttgagttaaatctagcatacacgatgaatattttaaacattgttttagcactaaacagtgacaatat |
13408405 |
T |
|
| Q |
107 |
tgagtcaaa |
115 |
Q |
| |
|
||||||||| |
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|
| T |
13408406 |
tgagtcaaa |
13408414 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0860 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0860
Description:
Target: scaffold0860; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1613 - 1501
Alignment:
| Q |
1 |
tgatgtgtatcaaaatattattgtgacattcttgacagttagagttaaatattgcaaacacaatgaatatgttaaacattattttggaactaaaaattgg |
100 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| |||| ||||||||| | ||||||||||| ||||| ||||||||| |||| | |||||| | || |
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|
| T |
1613 |
tgatgggtatcaaaatattattg--acattcttgaaagtttgagttaaatgtagcaaacacaataaatattttaaacattgttttagcactaaacagtga |
1516 |
T |
|
| Q |
101 |
gaatattgagtcaaa |
115 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1515 |
caatattgagtcaaa |
1501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 10299845 - 10299733
Alignment:
| Q |
1 |
tgatgtgtatcaaaatattattgtgacattcttgacagttagagttaaatattgcaaacacaatgaatatgttaaacattattttggaactaaaaattgg |
100 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| |||| ||||||||| | ||||||||||||||| | ||||||||| |||| |||||| | || |
|
|
| T |
10299845 |
tgatgggtatcaaaatattattg--acattcttgaaagtttgagttaaatgtagcaaacacaatgaattttttaaacattgttttaacactaaatagtga |
10299748 |
T |
|
| Q |
101 |
gaatattgagtcaaa |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10299747 |
gaatattgagtcaaa |
10299733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 12815225 - 12815113
Alignment:
| Q |
1 |
tgatgtgtatcaaaatattattgtgacattcttgacagttagagttaaatattgcaaacacaatgaatatgttaaacattattttggaactaaaaattgg |
100 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| |||| ||||||||| | ||||| ||||| ||||| ||||||||| |||| | |||||| | || |
|
|
| T |
12815225 |
tgatgggtatcaaaatattattg--acattcttgaaagtttgagttaaatgtagcaaatacaataaatattttaaacattgttttagcactaaacagtga |
12815128 |
T |
|
| Q |
101 |
gaatattgagtcaaa |
115 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12815127 |
caatattgagtcaaa |
12815113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 13496329 - 13496284
Alignment:
| Q |
3 |
atgtgtatcaaaatattattgtgacattcttgacagttagagttaaat |
50 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
13496329 |
atgtgtatcaaaatattattg--acattcttgagagttagagttaaat |
13496284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 38962181 - 38962116
Alignment:
| Q |
56 |
aaacacaatgaatatgttaaacattattttggaactaaaaattgggaatattgagtcaaaaattat |
121 |
Q |
| |
|
||||| ||||||||| |||||||||||||| | |||||| ||| ||||||||||| ||||| |||| |
|
|
| T |
38962181 |
aaacaaaatgaatattttaaacattattttagcactaaatatttggaatattgaggcaaaatttat |
38962116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 3331283 - 3331391
Alignment:
| Q |
1 |
tgatgtgtatcaaaatattattgtgacattcttgacagtt-agagttaaatattgcaaacacaatgaatatgttaaacattattttggaactaaaaattg |
99 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||| | |||||||| | ||||| | |||| |||| ||| ||||| |||| | |||||| ||| |
|
|
| T |
3331283 |
tgatgtgtatcaaaatattattgtgatgttcttgagagttaaaagttaaatgtagcaaatataatg-atattttatacattgttttagcactaaacatta |
3331381 |
T |
|
| Q |
100 |
ggaatattga |
109 |
Q |
| |
|
|||||||||| |
|
|
| T |
3331382 |
ggaatattga |
3331391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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