View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_108 (Length: 245)
Name: NF20869_low_108
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_108 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 6586866 - 6586670
Alignment:
| Q |
18 |
aggtctgtggtcaaatttaacacaaatctataaaactctaagcataacatcctcaaaaacaatccctttacttttcaaaatatatattgaaaaaattgaa |
117 |
Q |
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| T |
6586866 |
aggtctgtgctcaaatttaacacaaatctataaaactctaagcataacatcctcaaaaacaacccctttacttttcaaaatctatattgaaaaaattgaa |
6586767 |
T |
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| Q |
118 |
agtgaaggcagtgcagctgaagaatcatagttctaattagccaatataataattaatgaacctcatatcatcattgtttcacatttatttgaattga |
214 |
Q |
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| T |
6586766 |
agtgaaggcagtgcagctgaagaatcatagttctaattagccaatataataattaatgaacctcatatcatcattgtttcacatttatttgaattga |
6586670 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 29659823 - 29659728
Alignment:
| Q |
92 |
tcaaaatatatattgaaaaaattgaaagtgaaggcagtgcagctgaagaatcatagttctaattagccaatataataattaatgaacctcatatca |
187 |
Q |
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| T |
29659823 |
tcaaaatttatattgccataattaaaagtgaaggcagtgcaactgcggaatcttagttctaattaacctatataataatttatgaatctcgtatca |
29659728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 29719807 - 29719708
Alignment:
| Q |
92 |
tcaaaatatatattgaaaaaattgaaagtgaaggcagtgcagctgaagaatcatagttctaattagcca----atataataattaatgaacctcatatca |
187 |
Q |
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| T |
29719807 |
tcaaaatctatattgccaaaattaaaagtgaaggcagtccaactgtggaatcttagttctaattaaacaatatatataataattaatgaaccttatatca |
29719708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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