View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_110 (Length: 243)
Name: NF20869_low_110
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_110 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 41351763 - 41351986
Alignment:
| Q |
1 |
ctgaaagatgattatttggccaagtttaaaatttgcattataaatgtgatccaaaaaagaaatagcattctcattgtggaatatgatattatgcaggtta |
100 |
Q |
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| T |
41351763 |
ctgaaagatgattatttggccaagtttaaaatttgcattataaatgtgatccaaaaaagaaatagcattctcattgtggaatatgatattatgcaggtta |
41351862 |
T |
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| Q |
101 |
gtgagtcagaattatgttgcatctgctttgagcaggtatgcacaattgaagttcagaattgtggtcaccaaatgtgtgcacaatgcacattagccctttg |
200 |
Q |
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| T |
41351863 |
gtgagtcagaattatgttgcatctgctttgagcaggtatgcacaattgaagttcagaattgtggtcaccaaatgtgtgcacaatgcacattagccctttg |
41351962 |
T |
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| Q |
201 |
ttgctacaacaaaccgaacccgac |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
41351963 |
ttgctacaacaaaccgaacccgac |
41351986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 23714846 - 23714941
Alignment:
| Q |
94 |
caggttagtgagtcagaattatgttgcatctgctttgagcaggtatgcacaattgaagttcagaattgtggtcaccaaatgtgtgcacaatgcaca |
189 |
Q |
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| T |
23714846 |
caggttagcgagacggaattatgctgcatctgctttgagcaggtgtgtacaattgaggtccaagactgtggccaccagatgtgtgcacaatgcaca |
23714941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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