View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20869_low_111 (Length: 243)

Name: NF20869_low_111
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20869_low_111
NF20869_low_111
[»] chr8 (8 HSPs)
chr8 (1-233)||(34085370-34085599)
chr8 (166-209)||(13521700-13521743)
chr8 (166-209)||(13611235-13611278)
chr8 (161-201)||(37953239-37953279)
chr8 (163-230)||(13244724-13244791)
chr8 (181-231)||(29912191-29912241)
chr8 (165-227)||(32615892-32615954)
chr8 (166-194)||(14955214-14955242)
[»] chr7 (5 HSPs)
chr7 (168-230)||(47188472-47188534)
chr7 (161-227)||(12837891-12837957)
chr7 (139-227)||(8903017-8903105)
chr7 (166-231)||(11662998-11663063)
chr7 (166-211)||(29559211-29559256)
[»] chr1 (7 HSPs)
chr1 (166-227)||(47235534-47235595)
chr1 (166-230)||(7444968-7445032)
chr1 (166-228)||(52698488-52698550)
chr1 (167-228)||(24980816-24980877)
chr1 (167-228)||(24989574-24989635)
chr1 (168-201)||(46369655-46369688)
chr1 (167-231)||(26816552-26816616)
[»] chr4 (5 HSPs)
chr4 (166-209)||(53234293-53234336)
chr4 (166-228)||(48051729-48051791)
chr4 (166-231)||(24157758-24157822)
chr4 (181-228)||(51834763-51834810)
chr4 (166-230)||(8753003-8753067)
[»] chr5 (4 HSPs)
chr5 (137-231)||(8611723-8611817)
chr5 (135-201)||(41384817-41384882)
chr5 (163-201)||(27695125-27695163)
chr5 (159-196)||(41174290-41174327)
[»] chr3 (6 HSPs)
chr3 (166-231)||(31732067-31732133)
chr3 (137-230)||(27473650-27473743)
chr3 (166-205)||(44765183-44765222)
chr3 (168-209)||(15496132-15496173)
chr3 (168-205)||(25985449-25985486)
chr3 (161-201)||(44417870-44417910)
[»] chr2 (6 HSPs)
chr2 (166-228)||(40141942-40142004)
chr2 (167-209)||(3954426-3954468)
chr2 (163-197)||(13799779-13799813)
chr2 (166-231)||(38788775-38788841)
chr2 (166-227)||(11074496-11074557)
chr2 (144-201)||(34847319-34847376)
[»] chr6 (2 HSPs)
chr6 (166-208)||(4869092-4869134)
chr6 (153-197)||(8082438-8082482)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 34085599 - 34085370
Alignment:
Q  1 ccttccataaactaaaggagaaaaatcattcggtgtcgttagcatttcccttattttatttatgttgttccttatttactaaacatagtacatgtagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  34085599 ccttccataaactaaaggagaaaaatcattcggtgtcgttagcatttcc-ttattttatttatgttgttcattatttaccaaacatagtacatgtagaaa 34085501  T
Q  101 aattgtttaattgtagtatattttaaggaatgttaaagggttttgctaaccagtgtcataaggatacttgttaaggattcaaaaatagaaataattaata 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || || ||||||||||||| ||||||||||||||||| |||    
T  34085500 aattgtttaattgtagtatattttaaggaatgttaaaggattttgctaacgagtgtca-aatgacacttgttaaggatccaaaaatagaaataattgata 34085402  T
Q  201 actttcatggagatgaagttgctttttgatgat 233  Q
    |||||||||||||| ||||| ||||||||||||    
T  34085401 actttcatggagat-aagttactttttgatgat 34085370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 13521700 - 13521743
Alignment:
Q  166 acttgttaaggattcaaaaatagaaataattaataactttcatg 209  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  13521700 acttgttaaggatacaaaaatagaaataattgataactttcatg 13521743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 13611235 - 13611278
Alignment:
Q  166 acttgttaaggattcaaaaatagaaataattaataactttcatg 209  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  13611235 acttgttaaggatacaaaaatagaaataattgataactttcatg 13611278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 37953239 - 37953279
Alignment:
Q  161 aggatacttgttaaggattcaaaaatagaaataattaataa 201  Q
    |||| ||||||||||||||||||||||||||||||| ||||    
T  37953239 aggacacttgttaaggattcaaaaatagaaataattgataa 37953279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 13244791 - 13244724
Alignment:
Q  163 gatacttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgctttttgat 230  Q
    |||||||||||| |||||||||||||||| |||| |||||||| ||| |||  || ||| ||||||||    
T  13244791 gatacttgttaatgattcaaaaatagaaacaattgataacttttatgtagacaaaattgttttttgat 13244724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 29912241 - 29912191
Alignment:
Q  181 aaaaatagaaataattaataactttcatggagatgaagttgctttttgatg 231  Q
    |||||||||||||| | ||||||| |||| |||| ||||||||||||||||    
T  29912241 aaaaatagaaataaatgataacttccatgtagataaagttgctttttgatg 29912191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 32615954 - 32615892
Alignment:
Q  165 tacttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgcttttt 227  Q
    |||||||||| ||| |||||||||||| |||| |||||||||||| | || |||||| |||||    
T  32615954 tacttgttaaagatccaaaaatagaaacaattgataactttcatgtaaataaagttgtttttt 32615892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 14955214 - 14955242
Alignment:
Q  166 acttgttaaggattcaaaaatagaaataa 194  Q
    |||||||||||||||||||||||||||||    
T  14955214 acttgttaaggattcaaaaatagaaataa 14955242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 47188534 - 47188472
Alignment:
Q  168 ttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgctttttgat 230  Q
    |||||||||||||||||||||||| ||||||||||||| ||| |||  ||||| |||||||||    
T  47188534 ttgttaaggattcaaaaatagaaacaattaataacttttatgtagaaaaagttactttttgat 47188472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 12837891 - 12837957
Alignment:
Q  161 aggatacttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgcttttt 227  Q
    |||| ||||||||||||||||| |||||||| |||| |||| ||| ||| |||| ||||||||||||    
T  12837891 aggacacttgttaaggattcaagaatagaaacaattgataaattttatgtagattaagttgcttttt 12837957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 8903105 - 8903017
Alignment:
Q  139 ggttttgctaaccagtgtcataaggatacttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgcttttt 227  Q
    ||||||| |||| |||||| | |||| ||||||||| |||||||||||| ||| |||| |||||||| ||  | || ||||||||||||    
T  8903105 ggttttgttaacgagtgtccttaggacacttgttaaagattcaaaaataaaaacaattgataacttttatataaataaagttgcttttt 8903017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 11662998 - 11663063
Alignment:
Q  166 acttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgctttttgatg 231  Q
    |||||||| | ||||||||||||||| |||| |||||||||||| |||  | ||||||||| ||||    
T  11662998 acttgttaggaattcaaaaatagaaacaattgataactttcatgtagaaaacgttgcttttcgatg 11663063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 29559256 - 29559211
Alignment:
Q  166 acttgttaaggattcaaaaatagaaataattaataactttcatgga 211  Q
    |||||||||||||||||||||| |||||||| |||| ||| |||||    
T  29559256 acttgttaaggattcaaaaatataaataattgataaattttatgga 29559211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 47235595 - 47235534
Alignment:
Q  166 acttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgcttttt 227  Q
    |||||||||| ||||||||||||||| |||| |||||||||||| | || ||||||||||||    
T  47235595 acttgttaagaattcaaaaatagaaacaattgataactttcatgtaaataaagttgcttttt 47235534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 7445032 - 7444968
Alignment:
Q  166 acttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgctttttgat 230  Q
    ||||||||| ||||| ||||||||||||||| |||||||||||| | |  |||||||||||||||    
T  7445032 acttgttaaagattctaaaatagaaataattgataactttcatgtataaaaagttgctttttgat 7444968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 52698550 - 52698488
Alignment:
Q  166 acttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgctttttg 228  Q
    |||||||||||||| |||||| |||| |||| |||||||| |||||||  |||||| ||||||    
T  52698550 acttgttaaggattaaaaaatggaaacaattgataacttttatggagaaaaagttgttttttg 52698488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 24980816 - 24980877
Alignment:
Q  167 cttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgctttttg 228  Q
    |||||||||||| |||||||| ||| |||| |||| ||| ||| |||| |||||||||||||    
T  24980816 cttgttaaggatccaaaaatataaacaattgataatttttatgtagattaagttgctttttg 24980877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 24989574 - 24989635
Alignment:
Q  167 cttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgctttttg 228  Q
    |||||||||||| |||||||| ||| |||| |||| ||| ||| |||| |||||||||||||    
T  24989574 cttgttaaggatccaaaaatataaacaattgataatttttatgtagattaagttgctttttg 24989635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 46369688 - 46369655
Alignment:
Q  168 ttgttaaggattcaaaaatagaaataattaataa 201  Q
    ||||||||||||||||||||||||||||| ||||    
T  46369688 ttgttaaggattcaaaaatagaaataattgataa 46369655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 26816552 - 26816616
Alignment:
Q  167 cttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgctttttgatg 231  Q
    ||||||||| ||||||| ||||||| |||| |||||||||||| || | || ||||||| |||||    
T  26816552 cttgttaagaattcaaacatagaaacaattgataactttcatgtagtttaaattgctttgtgatg 26816616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 53234336 - 53234293
Alignment:
Q  166 acttgttaaggattcaaaaatagaaataattaataactttcatg 209  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||    
T  53234336 acttgttaaggattctaaaatagaaataattgataactttcatg 53234293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 48051791 - 48051729
Alignment:
Q  166 acttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgctttttg 228  Q
    ||||||||||||||||||||||||||||||| |||| ||| ||| |||  ||||| |||||||    
T  48051791 acttgttaaggattcaaaaatagaaataattgataaattttatgtagaaaaagttactttttg 48051729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 24157758 - 24157822
Alignment:
Q  166 acttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgctttttgatg 231  Q
    |||||||||| || |||||||| |||||||| ||||||||||| || || ||||||||||||||||    
T  24157758 acttgttaagaatccaaaaataaaaataattgataactttcataga-ataaagttgctttttgatg 24157822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 51834763 - 51834810
Alignment:
Q  181 aaaaatagaaataattaataactttcatggagatgaagttgctttttg 228  Q
    |||||||||||||| | |||||||||||| |||| |||||||||||||    
T  51834763 aaaaatagaaataaatgataactttcatgtagataaagttgctttttg 51834810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 8753003 - 8753067
Alignment:
Q  166 acttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgctttttgat 230  Q
    ||||||||| ||||| ||||||||||||||| |||||||| |||   |  |||||||||||||||    
T  8753003 acttgttaatgattctaaaatagaaataattgataactttaatgtgtaaaaagttgctttttgat 8753067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 8611723 - 8611817
Alignment:
Q  137 agggttttgctaaccagtgtcataaggatacttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgctttttgatg 231  Q
    ||||| |||||||| |||| | ||| || ||| ||||||||||||||| | |||| |||| |||| ||||||| |||  ||||||||||||||||    
T  8611723 agggtcttgctaacaagtgccctaatgacactcgttaaggattcaaaattggaaacaattgataattttcatgtagaaaaagttgctttttgatg 8611817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 41384882 - 41384817
Alignment:
Q  135 aaagggttttgctaaccagtgtcataaggatacttgttaaggattcaaaaatagaaataattaataa 201  Q
    |||| ||||||||||| |||||| || ||| | ||||||||||||||||||||||||||||| ||||    
T  41384882 aaagagttttgctaacaagtgtctta-ggacatttgttaaggattcaaaaatagaaataatttataa 41384817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 27695125 - 27695163
Alignment:
Q  163 gatacttgttaaggattcaaaaatagaaataattaataa 201  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  27695125 gatacttgttaaggattcaaaaatgaaaataattaataa 27695163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 41174290 - 41174327
Alignment:
Q  159 taaggatacttgttaaggattcaaaaatagaaataatt 196  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  41174290 taaggacacttgttaaggattcaaaaagagaaataatt 41174327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 31732067 - 31732133
Alignment:
Q  166 acttgttaaggattcaaaaa-tagaaataattaataactttcatggagatgaagttgctttttgatg 231  Q
    |||||||||||||||||||| | ||||||||| ||||||||||||  ||  ||||||||||||||||    
T  31732067 acttgttaaggattcaaaaaatggaaataattcataactttcatgttgaaaaagttgctttttgatg 31732133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 27473650 - 27473743
Alignment:
Q  137 agggttttgctaaccagtgtcataaggatacttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgctttttgat 230  Q
    |||||||||||||| |||||  | | | |||||||||| |||| ||||||  |||||||| |||||||||||  |||  |||||||||||||||    
T  27473650 agggttttgctaacaagtgtttttaaggtacttgttaatgatttaaaaatcaaaataattgataactttcatttagaaaaagttgctttttgat 27473743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 44765222 - 44765183
Alignment:
Q  166 acttgttaaggattcaaaaatagaaataattaataacttt 205  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  44765222 acttgttaaggatttaaaaataaaaataattaataacttt 44765183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 15496132 - 15496173
Alignment:
Q  168 ttgttaaggattcaaaaatagaaataattaataactttcatg 209  Q
    ||||||||||||| |||||| |||||||| ||||||||||||    
T  15496132 ttgttaaggattccaaaatataaataattgataactttcatg 15496173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 25985486 - 25985449
Alignment:
Q  168 ttgttaaggattcaaaaatagaaataattaataacttt 205  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  25985486 ttgttaaggatttaaaaatagaaataattgataacttt 25985449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 44417870 - 44417910
Alignment:
Q  161 aggatacttgttaaggattcaaaaatagaaataattaataa 201  Q
    |||| ||||||||| |||||||||||| |||||||||||||    
T  44417870 aggacacttgttaatgattcaaaaataaaaataattaataa 44417910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 40141942 - 40142004
Alignment:
Q  166 acttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgctttttg 228  Q
    |||||||||||||  ||||||||||| || | |||||||||||| |||| |||||||||||||    
T  40141942 acttgttaaggataaaaaaatagaaacaaattataactttcatgtagataaagttgctttttg 40142004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 3954426 - 3954468
Alignment:
Q  167 cttgttaaggattcaaaaatagaaataattaataactttcatg 209  Q
    |||||||| ||||  ||||||||||||||||||||||||||||    
T  3954426 cttgttaaagattttaaaatagaaataattaataactttcatg 3954468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 13799779 - 13799813
Alignment:
Q  163 gatacttgttaaggattcaaaaatagaaataatta 197  Q
    |||||||||||||||| ||||||||||||||||||    
T  13799779 gatacttgttaaggatacaaaaatagaaataatta 13799813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 38788841 - 38788775
Alignment:
Q  166 acttgttaaggattcaaaaa-tagaaataattaataactttcatggagatgaagttgctttttgatg 231  Q
    |||||||||||||||||||| |||||| |||| | |||||||||| |||  ||||| ||||||||||    
T  38788841 acttgttaaggattcaaaaaatagaaacaattgacaactttcatgtagaaaaagttactttttgatg 38788775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 11074496 - 11074557
Alignment:
Q  166 acttgttaaggattcaaaaatagaaataattaataactttcatggagatgaagttgcttttt 227  Q
    ||||||||||||||||||||| |||| |||  ||||||| |||| |||  ||||||||||||    
T  11074496 acttgttaaggattcaaaaatggaaacaatagataacttccatgcagaaaaagttgcttttt 11074557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 34847319 - 34847376
Alignment:
Q  144 tgctaaccagtgtcataaggatacttgttaaggattcaaaaatagaaataattaataa 201  Q
    ||||||| |||||||| |||  ||||||||| ||||| |||||||||||||| |||||    
T  34847319 tgctaacaagtgtcattagggcacttgttaaagattctaaaatagaaataatcaataa 34847376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 4869134 - 4869092
Alignment:
Q  166 acttgttaaggattcaaaaatagaaataattaataactttcat 208  Q
    |||||||||| ||| |||||||||||||||| |||||||||||    
T  4869134 acttgttaagaatttaaaaatagaaataattgataactttcat 4869092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 8082438 - 8082482
Alignment:
Q  153 gtgtcataaggatacttgttaaggattcaaaaatagaaataatta 197  Q
    ||||| |||||| || ||||||||||| |||||||||||||||||    
T  8082438 gtgtcctaaggacacatgttaaggatttaaaaatagaaataatta 8082482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University