View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_112 (Length: 243)
Name: NF20869_low_112
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_112 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 26644826 - 26644609
Alignment:
| Q |
11 |
ttattctctaaaagcagcaggaaatggaattcagacaatgcgattgaacttggtttaactgcttcaactccttcagacaacttggagtagttcaaaagag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26644826 |
ttattctctaaaagcagcaggaaatggaattcagacaatgcgattgaacttggtttaactgcttcaactccttcagacaacttggagtagttcaaaagag |
26644727 |
T |
|
| Q |
111 |
ccttgttttcaataaaatttccatttccacttgaaattccatcaagtagttaaaatattagaaataaaggtaaataagttcctaagaacaaacaatacgg |
210 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26644726 |
ccttgttttcaataaaatttccatttccacttgaagttccatcaagtagttaaaatattagaaataaaggtaaataagttcctaagaacaaacaatacgg |
26644627 |
T |
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| Q |
211 |
aaggatttaacaaaaaac |
228 |
Q |
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|||||||||||||||||| |
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| T |
26644626 |
aaggatttaacaaaaaac |
26644609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 10714141 - 10714358
Alignment:
| Q |
11 |
ttattctctaaaagcagcaggaaatggaattcagacaatgcgattgaacttggtttaactgcttcaactccttcagacaacttggagtagttcaaaagag |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10714141 |
ttattctctaaaagcagcaggaaatggaattcagacaatgcgattgaacttggtttaactgcttcaactccttcagacaacttggagtatttcaaaagag |
10714240 |
T |
|
| Q |
111 |
ccttgttttcaataaaatttccatttccacttgaaattccatcaagtagttaaaatattagaaataaaggtaaataagttcctaagaacaaacaatacgg |
210 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10714241 |
ccttgttttcaataaaatttccatttccaattgaagttccatcaagtagttaaaatattagaaataaaggtaaataagttcctaagaacaaacaatacgg |
10714340 |
T |
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| Q |
211 |
aaggatttaacaaaaaac |
228 |
Q |
| |
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|||||||||||||||||| |
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| T |
10714341 |
aaggatttaacaaaaaac |
10714358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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