View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20869_low_113 (Length: 242)

Name: NF20869_low_113
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20869_low_113
NF20869_low_113
[»] chr7 (1 HSPs)
chr7 (1-224)||(8694253-8694476)
[»] chr3 (13 HSPs)
chr3 (1-224)||(28079731-28079948)
chr3 (1-156)||(28130277-28130429)
chr3 (1-159)||(27998905-27999060)
chr3 (1-130)||(28144205-28144331)
chr3 (12-156)||(28047752-28047893)
chr3 (12-156)||(28471950-28472091)
chr3 (12-156)||(28491991-28492132)
chr3 (12-156)||(28512972-28513113)
chr3 (12-149)||(17748971-17749105)
chr3 (12-149)||(19050291-19050425)
chr3 (36-156)||(27910145-27910262)
chr3 (32-160)||(11409149-11409274)
chr3 (1-160)||(28178354-28178510)
[»] chr4 (4 HSPs)
chr4 (12-124)||(9329928-9330037)
chr4 (12-124)||(9383711-9383820)
chr4 (181-220)||(9329655-9329694)
chr4 (181-220)||(9383438-9383477)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 8694476 - 8694253
Alignment:
Q  1 ttgaaaacataataattgatgtaagaaaaggggaggaatcgagaggtgaaatagttgatgatgataatgacagcacaagtcaaggcttaatgtttcagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8694476 ttgaaaacataataattgatgtaagaaaaggggaggaatcgagaggtgaaatagttgatgatgataatgacagcacaagtcaaggcttaatgtttcagaa 8694377  T
Q  101 actggaagttattagtattgagaaatgtccaagttttaaattaatacttccgtttctctcggtgtttcagaaatgtccggcactaatatccatcacaata 200  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8694376 actggaagttattagtattgagaaatgtccaagctttgaattaatacttccgtttctctcagtgtttcagaaatgtccggcactaatatccatcacaata 8694277  T
Q  201 aaaagttgtgataagctgaaatac 224  Q
    ||||||||||||||||||||||||    
T  8694276 aaaagttgtgataagctgaaatac 8694253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 28079731 - 28079948
Alignment:
Q  1 ttgaaaacataataattgatgtaagaaaaggggaggaatcgagaggtgaaatagttgatgatgataatgacagcacaagtcaaggcttaatgtttcagaa 100  Q
    |||||||||||||||| |||| |||||||||| ||||||| ||||||||||||||   |||||||||| ||||||||||||| |||| ||| ||||||||    
T  28079731 ttgaaaacataataatagatgaaagaaaagggaaggaatcaagaggtgaaatagt---tgatgataataacagcacaagtcacggctcaatatttcagaa 28079827  T
Q  101 actggaagttattagtattgagaaatgtccaagttttaaattaatacttccgtttctctcggtgtttcagaaatgtccggcactaatatccatcacaata 200  Q
    |||||| ||| |||||||| |||| ||||||    || |||| |||||||||||||||||       ||  |   ||| ||||||  |||||||||||||    
T  28079828 actggaggttcttagtattaagaagtgtccagaacttgaatttatacttccgtttctctc---tacccatgatcttccagcactagaatccatcacaata 28079924  T
Q  201 aaaagttgtgataagctgaaatac 224  Q
    ||||||||||||||||||||||||    
T  28079925 aaaagttgtgataagctgaaatac 28079948  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 28130277 - 28130429
Alignment:
Q  1 ttgaaaacataataattgatgtaagaaaaggggaggaatcgagaggtgaaatagttgatgatgataatgacagcacaagtcaaggcttaatgtttcagaa 100  Q
    |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||    ||||||||||| | ||||||||| |||| ||||||||||||    
T  28130277 ttgaaaacataataatagatgaaagaaaagggcaggaatcgagaggtgaaatagt---cgatgataatgataacacaagtcatggctcaatgtttcagaa 28130373  T
Q  101 actggaagttattagtattgagaaatgtccaagttttaaattaatacttccgtttc 156  Q
    | || ||||| |||||||| |||| ||||||||  |  ||||||||||||||||||    
T  28130374 attgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttccgtttc 28130429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 27998905 - 27999060
Alignment:
Q  1 ttgaaaacataataattgatgtaagaaaaggggaggaatcgagaggtgaaatagttgatgatgataatgacagcacaagtcaaggcttaatgtttcagaa 100  Q
    ||||||||||||||||||||| |||||||||| ||||||| ||||||||||   ||  | |||||||||| |||||||||||||||| ||| ||||||||    
T  27998905 ttgaaaacataataattgatgaaagaaaagggaaggaatcaagaggtgaaa---ttattaatgataatgaaagcacaagtcaaggctcaatatttcagaa 27999001  T
Q  101 actggaagttattagtattgagaaatgtccaagttttaaattaatacttccgtttctct 159  Q
    ||||||  || || ||||| | || ||||||||  || ||| |||||||||||||||||    
T  27999002 actggagtttcttggtatttataattgtccaagaattgaatcaatacttccgtttctct 27999060  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 28144205 - 28144331
Alignment:
Q  1 ttgaaaacataataattgatgtaagaaaaggggaggaatcgagaggtgaaatagttgatgatgataatgacagcacaagtcaaggcttaatgtttcagaa 100  Q
    |||||||||||||||| | || |||||||||| ||||||| ||||||||||   ||  | |||||||||| |||||||||||||||| ||| ||||||||    
T  28144205 ttgaaaacataataataggtgaaagaaaagggaaggaatcaagaggtgaaa---ttattaatgataatgaaagcacaagtcaaggctcaatatttcagaa 28144301  T
Q  101 actggaagttattagtattgagaaatgtcc 130  Q
    |||||| ||| |||||||||||||||||||    
T  28144302 actggaggttcttagtattgagaaatgtcc 28144331  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 28047752 - 28047893
Alignment:
Q  12 ataattgatgtaagaaaaggggaggaatcgagaggtgaaatagttgatgatgataatgacagcacaagtcaaggcttaatgtttcagaaactggaagtta 111  Q
    ||||| |||| |||||||| | ||||||||||||||||||||||||||||| ||||   ||||||||||||||| | ||||||||||||| || | |||     
T  28047752 ataatagatgaaagaaaagagcaggaatcgagaggtgaaatagttgatgataataa---cagcacaagtcaaggttcaatgtttcagaaattgaatgttc 28047848  T
Q  112 ttagtattgagaaatgtccaagttttaaattaatacttccgtttc 156  Q
    |||||||| |||| ||||||||  || || |||||||||||||||    
T  28047849 ttagtattaagaagtgtccaagaattgaaataatacttccgtttc 28047893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 28472091 - 28471950
Alignment:
Q  12 ataattgatgtaagaaaaggggaggaatcgagaggtgaaatagttgatgatgataatgacagcacaagtcaaggcttaatgtttcagaaactggaagtta 111  Q
    ||||| |||| ||||||| || ||||||||||| || ||||||||||||||   ||||| | || |||||| |||| |||||||||||||||| |||||     
T  28472091 ataatagatgaaagaaaatggcaggaatcgagaagtaaaatagttgatgat---aatgataacaaaagtcatggctcaatgtttcagaaactgaaagttc 28471995  T
Q  112 ttagtattgagaaatgtccaagttttaaattaatacttccgtttc 156  Q
    |||||||| |||| ||||||||  || ||||||||||||||||||    
T  28471994 ttagtattaagaagtgtccaagaattgaattaatacttccgtttc 28471950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 28492132 - 28491991
Alignment:
Q  12 ataattgatgtaagaaaaggggaggaatcgagaggtgaaatagttgatgatgataatgacagcacaagtcaaggcttaatgtttcagaaactggaagtta 111  Q
    ||||| |||| ||||||| || ||||||||||| || ||||||||||||||   ||||| | || |||||| |||| |||||||||||||||| |||||     
T  28492132 ataatagatgaaagaaaatggcaggaatcgagaagtaaaatagttgatgat---aatgataacaaaagtcatggctcaatgtttcagaaactgaaagttc 28492036  T
Q  112 ttagtattgagaaatgtccaagttttaaattaatacttccgtttc 156  Q
    |||||||| |||| ||||||||  || ||||||||||||||||||    
T  28492035 ttagtattaagaagtgtccaagaattgaattaatacttccgtttc 28491991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 28513113 - 28512972
Alignment:
Q  12 ataattgatgtaagaaaaggggaggaatcgagaggtgaaatagttgatgatgataatgacagcacaagtcaaggcttaatgtttcagaaactggaagtta 111  Q
    ||||| |||| ||||||| || ||||||||||| || ||||||||||||||   ||||| | || |||||| |||| |||||||||||||||| |||||     
T  28513113 ataatagatgaaagaaaatggcaggaatcgagaagtaaaatagttgatgat---aatgataacaaaagtcatggctcaatgtttcagaaactgaaagttc 28513017  T
Q  112 ttagtattgagaaatgtccaagttttaaattaatacttccgtttc 156  Q
    |||||||| |||| ||||||||  || ||||||||||||||||||    
T  28513016 ttagtattaagaagtgtccaagaattgaattaatacttccgtttc 28512972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 17749105 - 17748971
Alignment:
Q  12 ataattgatgtaagaaaaggggaggaatcgagaggtgaaatagttgatgatgataatgacagcacaagtcaaggcttaatgtttcagaaactggaagtta 111  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||   ||||||||||| ||||||||| |||  |||| ||||||| ||| |||||     
T  17749105 ataatagatgaaagaaaaggggaggaatcaagaggtgaaatagttga---tgataatgacaacacaagtcatggcgcaatgcttcagaatctgaaagttc 17749009  T
Q  112 ttagtattgagaaatgtccaagttttaaattaatactt 149  Q
    ||| |||| |||| ||||||||  || |||||||||||    
T  17749008 ttaatattaagaattgtccaaggattgaattaatactt 17748971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 19050425 - 19050291
Alignment:
Q  12 ataattgatgtaagaaaaggggaggaatcgagaggtgaaatagttgatgatgataatgacagcacaagtcaaggcttaatgtttcagaaactggaagtta 111  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||   ||||||||||| ||||||||| |||  |||| ||||||| ||| |||||     
T  19050425 ataatagatgaaagaaaaggggaggaatcaagaggtgaaatagttga---tgataatgacaacacaagtcatggcgcaatgcttcagaatctgaaagttc 19050329  T
Q  112 ttagtattgagaaatgtccaagttttaaattaatactt 149  Q
    ||| |||| |||| ||||||||  || |||||||||||    
T  19050328 ttaatattaagaattgtccaaggattgaattaatactt 19050291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 27910145 - 27910262
Alignment:
Q  36 gaatcgagaggtgaaatagttgatgatgataatgacagcacaagtcaaggcttaatgtttcagaaactggaagttattagtattgagaaatgtccaagtt 135  Q
    |||||||||||||||||| |||||   |||||||||||||||||||| |||| ||||||| |||||||| ||||| |||||||| | |  ||||||||      
T  27910145 gaatcgagaggtgaaataattgat---gataatgacagcacaagtcatggctcaatgtttaagaaactgaaagttcttagtatttatagttgtccaagaa 27910241  T
Q  136 ttaaattaatacttccgtttc 156  Q
    || ||||||||||||||||||    
T  27910242 ttgaattaatacttccgtttc 27910262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 160
Target Start/End: Original strand, 11409149 - 11409274
Alignment:
Q  32 ggaggaatcgagaggtgaaatagttgatgatgataatgacagcacaagtcaaggcttaatgtttcagaaactggaagttattagtattgagaaatgtcca 131  Q
    |||||||| |||||||||||||||||||   |||||||||| | ||||||| |||| | ||||||||||||||||| || |||| ||| |||| ||||||    
T  11409149 ggaggaattgagaggtgaaatagttgat---gataatgacatcgcaagtcatggctcattgtttcagaaactggaaattcttaggattaagaagtgtcca 11409245  T
Q  132 agttttaaattaatacttccgtttctctc 160  Q
    |   || |||||||||||||  |||||||    
T  11409246 aaaattgaattaatacttccacttctctc 11409274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 28178354 - 28178510
Alignment:
Q  1 ttgaaaacataataattgatgtaagaaaaggggaggaatcgagaggtgaaatagttgatgatgataatgacagcacaagtcaaggcttaatgtttcagaa 100  Q
    |||||||||||||||| | || || ||| ||||| |||| ||||||||||||| |||||| |   |||| ||  |||||||| |||| |||||||| |||    
T  28178354 ttgaaaacataataatagttgaaaaaaacggggacgaattgagaggtgaaataattgatgct---aatggcaatacaagtcatggctcaatgtttccgaa 28178450  T
Q  101 actggaagttattagtattgagaaatgtccaagttttaaattaatacttccgtttctctc 160  Q
    |||  ||||| ||| | ||||||  ||||| ||  || ||||||||||||||||||||||    
T  28178451 actaaaagttcttattgttgagagctgtccgagaattgaattaatacttccgtttctctc 28178510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 9330037 - 9329928
Alignment:
Q  12 ataattgatgtaagaaaaggggaggaatcgagaggtgaaatagttgatgatgataatgacagcacaagtcaaggcttaatgtttcagaaactggaagtta 111  Q
    ||||| |||| | ||||||| ||||| ||||||||||||||| ||||||||   ||||| |||||||||||||||| ||||||| |||||||||||||||    
T  9330037 ataatagatgaaggaaaaggtgaggagtcgagaggtgaaataattgatgat---aatgaaagcacaagtcaaggctcaatgtttaagaaactggaagtta 9329941  T
Q  112 ttagtattgagaa 124  Q
    |||||||||||||    
T  9329940 ttagtattgagaa 9329928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 9383820 - 9383711
Alignment:
Q  12 ataattgatgtaagaaaaggggaggaatcgagaggtgaaatagttgatgatgataatgacagcacaagtcaaggcttaatgtttcagaaactggaagtta 111  Q
    ||||| |||| | ||||||| ||||| ||||||||||||||| ||||||||   ||||| |||||||||||||||| ||||||| |||||||||||||||    
T  9383820 ataatagatgaaggaaaaggtgaggagtcgagaggtgaaataattgatgat---aatgaaagcacaagtcaaggctcaatgtttaagaaactggaagtta 9383724  T
Q  112 ttagtattgagaa 124  Q
    |||||||||||||    
T  9383723 ttagtattgagaa 9383711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 9329694 - 9329655
Alignment:
Q  181 cactaatatccatcacaataaaaagttgtgataagctgaa 220  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  9329694 cactaaaatccatcataataaaaagttgtgataagctgaa 9329655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 9383477 - 9383438
Alignment:
Q  181 cactaatatccatcacaataaaaagttgtgataagctgaa 220  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  9383477 cactaaaatccatcataataaaaagttgtgataagctgaa 9383438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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