View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_12 (Length: 632)
Name: NF20869_low_12
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 501; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 111 - 615
Target Start/End: Original strand, 39943118 - 39943622
Alignment:
| Q |
111 |
aatatcatcaaactttttcttgttactcctttctacctactcattggttttatcaatccatatttgttgaagtataaatctcttgaagtataatttcatt |
210 |
Q |
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| T |
39943118 |
aatatcatcaaactttttcttgttactcctttctacatactcattggttttatcaatccatatttgttgaagtataaatctcttgaagtataatttcatt |
39943217 |
T |
|
| Q |
211 |
aacttgtcagagagttgaagtaaatcatatcacttggcttagcttccaataacccttaaatggagatttctataatgagaaacctctatgatgcatcatt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39943218 |
aacttgtcagagagttgaagtaaatcatatcacttggcttagcttccaataacccttaaatggagatttctataatgagaaacctctatgatgcatcatt |
39943317 |
T |
|
| Q |
311 |
aaaaggatgtgtaagtagcttaaaagcacttatccaaaaagaccctctaattctaagtagagtttcactctatccattctctgaaaccccattacacata |
410 |
Q |
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| T |
39943318 |
aaaaggatgtgtaagtagcttaaaagcacttatccaaaaagaccctctaattctaagtagagtttcactctatccattctctgaaaccccattacacata |
39943417 |
T |
|
| Q |
411 |
gcttctttacttggacatttagaattatgtcaaattcttcttgacataaatcccaacttagcagctgaagtgaactcagaaggacattgcgctcttcatc |
510 |
Q |
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| T |
39943418 |
gcttctttacttggacatttagaattatgtcaaattcttcttgacataaatcccaacttagcagctgaagtgaactcagaaggacattgcgctcttcatc |
39943517 |
T |
|
| Q |
511 |
tagcttctgcaaaagggcacattgaaatagtgaaagctttgttgttaacagatcaagaaacttgcttgattcgcgacaaagatgacaaacttcctctcca |
610 |
Q |
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| T |
39943518 |
tagcttctgcaaaagggcacattgaaatagtgaaagctttgttgttaacagatcaagaaacttgcttgattcgcgacaaagatgacaaacttcctctcca |
39943617 |
T |
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| Q |
611 |
ttttg |
615 |
Q |
| |
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||||| |
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| T |
39943618 |
ttttg |
39943622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 39943033 - 39942918
Alignment:
| Q |
1 |
cgctaaccatttaatcaagattggaagatctaaaaaaggctgattttgattttataatttaaaatatcgaagttaaatttgaactgtctgatcttgattg |
100 |
Q |
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| T |
39943033 |
cgctaaccgtttaatcaagattggaagatctaaaaaaggctgattttgattttataatttaaaatatcgaagttaaatttgaactgtctgatcttgattg |
39942934 |
T |
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| Q |
101 |
aacggtcaccaatatc |
116 |
Q |
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| T |
39942933 |
aacggtcaccgatatc |
39942918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 301 - 524
Target Start/End: Original strand, 39948177 - 39948400
Alignment:
| Q |
301 |
atgcatcattaaaaggatgtgtaagtagcttaaaagcacttatccaaaaagaccctctaattctaagtagagtttcactctatccattctctgaaacccc |
400 |
Q |
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||||||||||||| || |||||||| ||||| | || | ||||||| | ||||||| ||| | || | ||||||| | ||||| |||||| ||| || |
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| T |
39948177 |
atgcatcattaaatagaagtgtaagttccttaagaacattgatccaaagaaaccctctcattttgagcaaagtttcattgtatcccttctctataacacc |
39948276 |
T |
|
| Q |
401 |
attacacatagcttctttacttggacatttagaattatgtcaaattcttcttgacataaatcccaacttagcagctgaagtgaactcagaaggacattgc |
500 |
Q |
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||| |||||||| ||||| |||||| | || || || ||||| ||||||||||| ||| ||||||| |||||| |||||||||||| |||||||| |||| |
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| T |
39948277 |
attgcacatagcctctttgcttggaaacttcgagttttgtcagattcttcttgatatagatcccaatttagcatctgaagtgaacttagaaggacgttgc |
39948376 |
T |
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| Q |
501 |
gctcttcatctagcttctgcaaaa |
524 |
Q |
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| T |
39948377 |
cctcttcatttggtttctgcaaaa |
39948400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 476 - 605
Target Start/End: Original strand, 39940581 - 39940710
Alignment:
| Q |
476 |
tgaagtgaactcagaaggacattgcgctcttcatctagcttctgcaaaagggcacattgaaatagtgaaagctttgttgttaacagatcaagaaacttgc |
575 |
Q |
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||||||| ||||| |||| | || | |||||||| | ||||| || |||| |||||| ||||||||||| |||||||| | ||| ||| | | | ||| |
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| T |
39940581 |
tgaagtggactcaaaaggtcgttaccctcttcatttggcttcagctgaaggacacattcaaatagtgaaaactttgttgatgacaaatccaaatatttgt |
39940680 |
T |
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| Q |
576 |
ttgattcgcgacaaagatgacaaacttcct |
605 |
Q |
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| T |
39940681 |
ttgattcccgacaatgatgacaaacttcct |
39940710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 20897193 - 20897144
Alignment:
| Q |
49 |
attttataatttaaaatatcgaagttaaatttgaactgtctgatcttgat |
98 |
Q |
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| T |
20897193 |
attttataattttaaatatcgaacttgaatttgaactgactgatcttgat |
20897144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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