View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_124 (Length: 228)
Name: NF20869_low_124
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_124 |
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Alignment Details
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 41124329 - 41124391
Alignment:
| Q |
21 |
tattaaagatgaaagctaatcaaaatagttatttcattttcaagcataaaaattatttttcaa |
83 |
Q |
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| T |
41124329 |
tattaaagatgaaagctaatcaaaatagttatttcattttcaagcataaaaattatttttcaa |
41124391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 41124470 - 41124525
Alignment:
| Q |
159 |
catactctccaatgaggttgatttttatactattttgtaacagttactagtattat |
214 |
Q |
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| T |
41124470 |
cataccctccaatgaggttgatttttatactattttgtaacagttactaatattat |
41124525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 124
Target Start/End: Original strand, 41124406 - 41124435
Alignment:
| Q |
95 |
ataataacctacacacagtaactagaacat |
124 |
Q |
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| T |
41124406 |
ataataacctacacacagtaactagaacat |
41124435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 288995 - 288949
Alignment:
| Q |
32 |
aaagctaatcaaaatagttatttcattttcaagcataaaaattatttt |
79 |
Q |
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| T |
288995 |
aaagctaatgaaaatagctatttcattttcaa-cataaaaattatttt |
288949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 18426285 - 18426331
Alignment:
| Q |
32 |
aaagctaatcaaaatagttatttcattttcaagcataaaaattatttt |
79 |
Q |
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| T |
18426285 |
aaagttaatcaaactagttatttcattttcaa-cataaaaattatttt |
18426331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 13284582 - 13284622
Alignment:
| Q |
39 |
atcaaaatagttatttcattttcaagcataaaaattattttt |
80 |
Q |
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| T |
13284582 |
atcaaaatagttatttcactttcaa-cataaaaattattttt |
13284622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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