View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_131 (Length: 213)
Name: NF20869_low_131
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_131 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 3620870 - 3620686
Alignment:
| Q |
20 |
gaagagaaggatatagttgacgtgttacttgagttaaaaaatcagggtcgtctctcaattgatctcaccaatgataacatcaaagctgtcgttatggtat |
119 |
Q |
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| T |
3620870 |
gaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaataatcacatcaaagccgtcgttatggtat |
3620771 |
T |
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| Q |
120 |
gttctcatgattttcaatat---ttctttttggttatatgccctgttatatagtgttcagaacactcttttcaagatattcttcg |
201 |
Q |
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| T |
3620770 |
gttctcgtgacttttaatatatatatttttttgttttataccctgttatataatgttccgaacactcttttcaagatattgttcg |
3620686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 3631268 - 3631164
Alignment:
| Q |
19 |
agaagagaaggatatagttgacgtgttacttgagttaaaaaatcagggtcgtctctcaattgatctcaccaatgataacatcaaagctgtcgttatggta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||||| |
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| T |
3631268 |
agaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatccgtccttatggta |
3631169 |
T |
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| Q |
119 |
tgttc |
123 |
Q |
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| T |
3631168 |
tgttc |
3631164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 14817 - 14921
Alignment:
| Q |
19 |
agaagagaaggatatagttgacgtgttacttgagttaaaaaatcagggtcgtctctcaattgatctcaccaatgataacatcaaagctgtcgttatggta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||||| |
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| T |
14817 |
agaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatccgtccttatggta |
14916 |
T |
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| Q |
119 |
tgttc |
123 |
Q |
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||||| |
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| T |
14917 |
tgttc |
14921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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