View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_135 (Length: 207)
Name: NF20869_low_135
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_135 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 2460842 - 2460673
Alignment:
| Q |
20 |
atgaacaagcaccatattaaattaattatatgaatagtgagagcaagaaaatcaattcaaatacctttctatctttaccgatgttgaggacaattaattc |
119 |
Q |
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| T |
2460842 |
atgaacaagcaccatattaaattaattatatgaataatgagagcaagaaaatcaattcaaatacctttctatctttaccgatgttgaggacaattaattc |
2460743 |
T |
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| Q |
120 |
aaccaagcctttactgttcatcaagaatccaagcactaaagactcgttgaaaggtactttacatagaaga |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2460742 |
aaccaagcctttactgttcatcaagaatccaagcactaaagactcgttgaaaggtactttacatagaaga |
2460673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 30 - 189
Target Start/End: Complemental strand, 2449815 - 2449655
Alignment:
| Q |
30 |
accatattaaattaatt-atatgaatagtgagagcaagaaaatcaattcaaatacctttctatctttaccgatgttgaggacaattaattcaaccaagcc |
128 |
Q |
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||||||||||||||||| ||| ||||| ||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2449815 |
accatattaaattaatttataggaataatgagagcaagaaaataaactcaaatacctttctatctttaccaatgttgaggacaattaattcaaccaagcc |
2449716 |
T |
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| Q |
129 |
tttactgttcatcaagaatccaagcactaaagactcgttgaaaggtactttacatagaaga |
189 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2449715 |
tttactattcatcaagaatccaagcactaaagactcgttgaaaggtactttacatataaga |
2449655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 2445034 - 2444901
Alignment:
| Q |
52 |
aatagtgagagcaagaaaatcaattcaaatacctttctatctttaccgatgttgaggacaattaattcaaccaagcctttactgttcatcaagaatccaa |
151 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2445034 |
aatagtgagagcaagaaaat----tcaaatacctttcgatctttaccaatgttgaggacaattaattcaaccaagcctttactattcatcaagaatccaa |
2444939 |
T |
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| Q |
152 |
gcactaaagactcgttgaaaggtactttacatagaaga |
189 |
Q |
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||||||||||||| || |||| |||||||||| |||| |
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| T |
2444938 |
gcactaaagactcattaaaagacactttacataaaaga |
2444901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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