View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_16 (Length: 604)
Name: NF20869_low_16
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_16 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 265 - 604
Target Start/End: Original strand, 27806412 - 27806749
Alignment:
| Q |
265 |
acgtagagtaataattaagtgagagaatttatatatccattggcctttaagattttaggtgaagatttggtgttcaatccacttgtgtaattgtccaaaa |
364 |
Q |
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| T |
27806412 |
acgtagagtaataattaagtgagaggattcatatatccattggcctttaagattttaggtgaagatttggtgttcaatccatttgtgtaattgtccaaaa |
27806511 |
T |
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| Q |
365 |
tctaaaacgatgataccctaagtttccattatttccatctcgatttgtgcgtgtgtgtatatatattctttgatttaccaaagtatataatttttaatgt |
464 |
Q |
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| T |
27806512 |
tctaaaacgatgataccctgagtttccattatttccatctcgatttgtgcgtgt--gtatatatattctttgatttaccaaagtatataatttttaatgt |
27806609 |
T |
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| Q |
465 |
ttcaaagtaaatctgtaaaatatactttttgtcaaaattacaataatacattgtgattttgacaaactcacactcaatctaaacttattctagaccttct |
564 |
Q |
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| T |
27806610 |
ttcaaagtaaatctgtaaaatatactttttgtcaaaattacaataatacattgtgattttgacaaactcacactcaatctaaacttattctagaccttct |
27806709 |
T |
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| Q |
565 |
aaaccaccactacatgtacaaactacccattttatatgtt |
604 |
Q |
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| T |
27806710 |
aaaccacctctacatgtgcaaactactcattttatatgtt |
27806749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 53 - 269
Target Start/End: Original strand, 27806158 - 27806383
Alignment:
| Q |
53 |
atatgttaattaattccaaaagacaaaatatttagccttcattacaataatagctataaatgtgctaatgaatataggattgaaattaattgtatgtttt |
152 |
Q |
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| T |
27806158 |
atatgttaattaattccaaaagacaaaatatttagccttctatacaataatagctataaatgtgctaatgaatataggattgaaattaattgtatgtttt |
27806257 |
T |
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| Q |
153 |
cttgaacttacacacactttgatagatttgcttccttagcatgtatgttttatgctttaatagtctg---------nnnnnnnagtctgaattagaagcc |
243 |
Q |
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| T |
27806258 |
cttgaacttacccacactttgatagatttgcttcctttgcatgtatgttttatgctttaatagtctgttttttttttttttctagtctgaattagaagcc |
27806357 |
T |
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| Q |
244 |
tcatattagattgaaaagcgaacgta |
269 |
Q |
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| T |
27806358 |
tcatattagattgaaaagtgaacgta |
27806383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 27814087 - 27814181
Alignment:
| Q |
125 |
tataggattgaaattaattgtatgttttcttgaacttacacacactttgatagatttgcttccttagcatgtatgttttatgctttaatagtctg |
219 |
Q |
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| T |
27814087 |
tatatgattgaaattaaatgtatgttttcttgaacttacccacactttgatagatttgcttccttagcctgtatattttctactttgatagtctg |
27814181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 480 - 570
Target Start/End: Original strand, 27814375 - 27814465
Alignment:
| Q |
480 |
taaaatatactttttgtcaaaattacaataatacattgtgattttgacaaactcacactcaatctaaacttattctagaccttctaaacca |
570 |
Q |
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| T |
27814375 |
taaaatatagtttttgtcaaaattacaataatacattgtgattttgaaaaactaatcatcgatctaaatttattccagaccttctaaacca |
27814465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 27813405 - 27813455
Alignment:
| Q |
18 |
gtaagggttgaaataactcttgtacttttcttagtatatgttaattaattc |
68 |
Q |
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| T |
27813405 |
gtaagggttgaaatatctcttatgcttttcttaatatatgttaattaattc |
27813455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 27814229 - 27814286
Alignment:
| Q |
295 |
atatatccattggcctttaagattttaggtgaagatttggtgttcaatccacttgtgt |
352 |
Q |
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| T |
27814229 |
atatatctattagcctttaagattttggatgaaaatgtggtgttcaatccacttgtgt |
27814286 |
T |
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