View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_18 (Length: 604)
Name: NF20869_low_18
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 8035628 - 8035251
Alignment:
| Q |
1 |
aagttaagaagataaaataagaaagaataaagaaaatttgttttgaaaacatgaattaacttttaagacatggaatacacacacaagtttcnnnnnnnta |
100 |
Q |
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| T |
8035628 |
aagttaagaagataaaaaaagaaatgataaagaaaatttgttttgaaaacatgaatcaacttttaaaacatcgaatacaca----agtttcaaaaagata |
8035533 |
T |
|
| Q |
101 |
tttctatctttaactttttaacttatgtgtggggcacaagttcgtattttcctttaaaaaattaagatattcgctatacacaattgcagaaattaattca |
200 |
Q |
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||| || |||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
8035532 |
tttttacttttaactttttaacttatgtgttgggcacgagttcatattttcctttaaaaaattaagatattcgctatgcacaattgtagaaattaattca |
8035433 |
T |
|
| Q |
201 |
ttgaatatgagagaaccataatagtttacacgacactctttatccttattgagtatcactttcaattatttcatataagtaaagaaaaagttgtaaataa |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8035432 |
ttgaatatgagagaaccataatagtttatacgacactctttatccatgttgagtatcactttcaattatttcatataagtaaagaaaaagttgtaaataa |
8035333 |
T |
|
| Q |
301 |
atagtgtggcatttttataaaattactcttttgttttttgacgtaatataaaattactcttattaatcattaaatcctgcct |
382 |
Q |
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| T |
8035332 |
atagtgtggcatttttataaaattactcttttgttttttgacgtaatataaaattactcttattaatcattaaatcctgcct |
8035251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 378 - 586
Target Start/End: Original strand, 6667692 - 6667900
Alignment:
| Q |
378 |
tgccttttcccttcaccaatttggctcacttttacccttcccgtaatttcttattccctatctttcactttcattcagatggggttttcacagccacacc |
477 |
Q |
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| T |
6667692 |
tgccttttcccttcaccaatttggctcacttttacccttcccgtaatttcttattccctatctttcactttcattcagatggggttttcacagccacacc |
6667791 |
T |
|
| Q |
478 |
accgcttgcaaccattgccacatctccttgcaaccaccgccacttctcttcaacgggaatcctttttgctagatagtgaacaaattctgctttgcaagga |
577 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6667792 |
accgcttgcaaccactgccacatctccttgcaaccaccgccacttctcttcaacgggaatcctttttgctagatagtgaacaaattctgctttgtaagga |
6667891 |
T |
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| Q |
578 |
acaaagagc |
586 |
Q |
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||||||||| |
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| T |
6667892 |
acaaagagc |
6667900 |
T |
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