View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20869_low_19 (Length: 603)

Name: NF20869_low_19
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20869_low_19
NF20869_low_19
[»] chr2 (7 HSPs)
chr2 (358-585)||(6667673-6667900)
chr2 (95-284)||(6667463-6667652)
chr2 (95-216)||(28922365-28922485)
chr2 (111-216)||(14456257-14456362)
chr2 (98-216)||(21922337-21922453)
chr2 (116-166)||(14456373-14456423)
chr2 (95-163)||(28926075-28926144)
[»] chr3 (5 HSPs)
chr3 (95-216)||(15291461-15291582)
chr3 (126-217)||(48909782-48909873)
chr3 (95-216)||(49235426-49235547)
chr3 (95-165)||(15996379-15996449)
chr3 (95-164)||(1529165-1529236)
[»] chr5 (2 HSPs)
chr5 (2-96)||(8035605-8035699)
chr5 (96-216)||(22780008-22780128)
[»] chr7 (2 HSPs)
chr7 (93-216)||(48850724-48850847)
chr7 (92-188)||(39742270-39742367)
[»] chr4 (4 HSPs)
chr4 (112-216)||(7810064-7810169)
chr4 (95-181)||(6898735-6898822)
chr4 (94-141)||(27067873-27067920)
chr4 (94-163)||(12094856-12094926)
[»] chr6 (3 HSPs)
chr6 (95-216)||(26840415-26840536)
chr6 (95-216)||(26839989-26840110)
chr6 (95-141)||(31665653-31665699)
[»] chr8 (3 HSPs)
chr8 (91-163)||(9888950-9889023)
chr8 (106-163)||(4966451-4966509)
chr8 (95-141)||(42315342-42315388)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 358 - 585
Target Start/End: Original strand, 6667673 - 6667900
Alignment:
Q  358 ttatgctaacaacttgctttgccttttcccttcaccaatttggctcacttttacccttcccgtaatttcttattccctatctttcactttcattcagatg 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6667673 ttatgctaacaacttgctttgccttttcccttcaccaatttggctcacttttacccttcccgtaatttcttattccctatctttcactttcattcagatg 6667772  T
Q  458 gggttttcacagccacaccaccgcttgcaaccattgccacatctccttgcaaccaccgccacttctcttcaacgggaatcctttttgctagatagtgaac 557  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6667773 gggttttcacagccacaccaccgcttgcaaccactgccacatctccttgcaaccaccgccacttctcttcaacgggaatcctttttgctagatagtgaac 6667872  T
Q  558 aaattctgctttgcaaggaacaaagagc 585  Q
    ||||||||||||| ||||||||||||||    
T  6667873 aaattctgctttgtaaggaacaaagagc 6667900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 95 - 284
Target Start/End: Original strand, 6667463 - 6667652
Alignment:
Q  95 atctttctttctaaagcttgtttggtcaaactattatttaccctaatccaaacctaatttttccctccattgcattagcattaactctttctaaatgcta 194  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6667463 atctttctttctaaagcttgtttggtcaagctattgtttaccctaatcctaacctaatttttccctccattgcattagcattaactctttctaaatgcta 6667562  T
Q  195 atcctaatcagcattccactttagctttcccacacaaataattatttccaacatacctctcttcgtgttttccatgcaaatgaatatcca 284  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6667563 atcctaatcagcattccactttagctttcccacacaaataactatttccaacatacctctcttcgtgttttccatgcaaatgaatatcca 6667652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 28922485 - 28922365
Alignment:
Q  95 atctttctttctaaagcttgtttggtcaaactattatttaccctaatccaaacctaatttttccctccattgcattagcattaactctttctaaatgcta 194  Q
    ||||| ||| ||||||| ||| ||||||| ||||| ||||||||||||  |||||||||||||| |||||||  |||||||||| || |||||| || ||    
T  28922485 atcttacttactaaagcatgtctggtcaagctattgtttaccctaatcttaacctaatttttccatccattgtgttagcattaa-tcattctaagtggta 28922387  T
Q  195 atcctaatcagcattccacttt 216  Q
    ||||||||||||||||||||||    
T  28922386 atcctaatcagcattccacttt 28922365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 14456362 - 14456257
Alignment:
Q  111 cttgtttggtcaaactattatttaccctaatccaaacctaatttttccctccattgcattagcattaactctttctaaatgctaatcctaatcagcattc 210  Q
    ||||||||||||| |||| |||||||||||| |||  |||||||||||||||||||   ||||||||| || |||||| || || ||||||||| |||||    
T  14456362 cttgtttggtcaagctatcatttaccctaattcaactctaatttttccctccattgtgatagcattaaatccttctaagtggtattcctaatcaacattc 14456263  T
Q  211 cacttt 216  Q
    ||||||    
T  14456262 cacttt 14456257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 98 - 216
Target Start/End: Original strand, 21922337 - 21922453
Alignment:
Q  98 tttctttctaaagcttgtttggtcaaactattatttaccctaatccaaacctaat-ttttccctccattgcattagcattaactctttctaaatgctaat 196  Q
    |||||||||||||||||| || |||| |||| | |||||||||||  |||||||| |||||||||| |    |||||||||||   |||||| ||| | |    
T  21922337 tttctttctaaagcttgtctgatcaagctataacttaccctaatcttaacctaatattttccctccttaatcttagcattaac---ttctaagtgcaatt 21922433  T
Q  197 cctaatcagcattccacttt 216  Q
    ||||||||||||||||||||    
T  21922434 cctaatcagcattccacttt 21922453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 14456423 - 14456373
Alignment:
Q  116 ttggtcaaactattatttaccctaatccaaacctaatttttccctccattg 166  Q
    |||||||| |||| |||||||||||| ||| ||||||||||||||||||||    
T  14456423 ttggtcaagctatcatttaccctaattcaaccctaatttttccctccattg 14456373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 28926075 - 28926144
Alignment:
Q  95 atctttctttctaaagcttgtttggtcaaactattatttaccctaa-tccaaacctaatttttccctcca 163  Q
    ||||||||| ||||||||||| ||||||| |||||| | ||||||| ||  |||||||||||||||||||    
T  28926075 atctttcttactaaagcttgtctggtcaagctattagtaaccctaattcttaacctaatttttccctcca 28926144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 8e-41; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 15291461 - 15291582
Alignment:
Q  95 atctttctttctaaagcttgtttggtcaaactattatttaccctaatccaaacctaatttttccctccattgcattagcattaactctttctaaatgcta 194  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||||||||  |||||||||||||||||||||| |||||||||||||| |||||| |||||    
T  15291461 atctttcttactaaagcttgtttggtcaagctattgtttaccctaatcttaacctaatttttccctccattgtattagcattaactccttctaagtgcta 15291560  T
Q  195 atcctaatcagcattccacttt 216  Q
    |||||||||| |||||||||||    
T  15291561 atcctaatcaacattccacttt 15291582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 48909873 - 48909782
Alignment:
Q  126 tattatttaccctaatccaaacctaatttttccctccattgcattagcattaactctttctaaatgctaatcctaatcagcattccacttta 217  Q
    |||| ||||||||||||  |||||||||||||||| ||||| |||||  ||||||| |||||||||||||||||||||||||||||||||||    
T  48909873 tattgtttaccctaatcttaacctaatttttcccttcattgtattagtgttaactccttctaaatgctaatcctaatcagcattccacttta 48909782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 49235547 - 49235426
Alignment:
Q  95 atctttctttctaaagcttgtttggtcaaactattatttaccctaatccaaacctaatttttccctccattgcattagcattaactctttctaaatgcta 194  Q
    ||||||||| |||||| |||||||||||| |||| |||||||||||| |||   |||||||| |||||||||   || |||||| ||||| ||| || ||    
T  49235547 atctttcttactaaagtttgtttggtcaagctatcatttaccctaattcaacattaattttttcctccattgtgataacattaaatctttttaagtggta 49235448  T
Q  195 atcctaatcagcattccacttt 216  Q
     |||||||||||||||||||||    
T  49235447 ttcctaatcagcattccacttt 49235426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 15996449 - 15996379
Alignment:
Q  95 atctttctttctaaagcttgtttggtcaaactattatttaccctaatccaaacctaatttttccctccatt 165  Q
    ||||||||| ||||||||||| || |||| ||||| ||||||||||| | |||||||||||||||| ||||    
T  15996449 atctttcttactaaagcttgtctgatcaagctattgtttaccctaattctaacctaatttttccctgcatt 15996379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 1529165 - 1529236
Alignment:
Q  95 atctttctttctaaagcttgtttggtcaaactattatttaccctaa-tccaaacctaa-tttttccctccat 164  Q
    ||||||||| ||||||||||||||||||| |||||| | ||||||| ||  ||||||| |||||||||||||    
T  1529165 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaattttttccctccat 1529236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 8035605 - 8035699
Alignment:
Q  2 tttcttattttatcttcttaacttgtactttagtgcataagttagcatgatcttttttaatggagggagagaatattaggccagtccaccaaaat 96  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||    
T  8035605 tttctttttttatcttcttaacttgtactttagtgcataagttagcatgaccctttttaatggagggagaaaatattaggccagtccaccaaaat 8035699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 22780128 - 22780008
Alignment:
Q  96 tctttctttctaaagcttgtttggtcaaactattatttaccctaatccaaacctaatttttccctccattgcattagcattaactctttctaaatgctaa 195  Q
    |||||||||||||||||||| || |||| ||||| ||||||||||||  ||||||||||||||||||||||  ||||||||||||| |||||| ||||||    
T  22780128 tctttctttctaaagcttgtctgatcaagctattgtttaccctaatcttaacctaatttttccctccattgtgttagcattaactccttctaagtgctaa 22780029  T
Q  196 tcctaatcagcattccacttt 216  Q
    || ||||||||||| ||||||    
T  22780028 tcataatcagcatttcacttt 22780008  T

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Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 93 - 216
Target Start/End: Original strand, 48850724 - 48850847
Alignment:
Q  93 aaatctttctttctaaagcttgtttggtcaaactattatttaccctaatccaaacctaatttttccctccattgcattagcattaactctttctaaatgc 192  Q
    ||||||||||||||||||||||| || |||| ||||| ||||||||||||  |||||||||||||||||||||   ||||||||||||| |||||| |||    
T  48850724 aaatctttctttctaaagcttgtctgatcaagctattgtttaccctaatcttaacctaatttttccctccattatgttagcattaactccttctaagtgc 48850823  T
Q  193 taatcctaatcagcattccacttt 216  Q
    ||||||||||||||||| ||||||    
T  48850824 taatcctaatcagcatttcacttt 48850847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 39742367 - 39742270
Alignment:
Q  92 aaaatctttctttctaaagcttgtttggtcaaactattatttaccctaatccaaacctaat-ttttccctccattgcattagcattaactctttctaa 188  Q
    |||||||||||| |||||||||||||| |||| |||||  | |||||||||  |||||||| ||||||||| |||   ||||||||||||| ||||||    
T  39742367 aaaatctttcttactaaagcttgtttgatcaagctattgataaccctaatcttaacctaatattttccctcgattatgttagcattaactccttctaa 39742270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 112 - 216
Target Start/End: Original strand, 7810064 - 7810169
Alignment:
Q  112 ttgtttggtcaaactattatttaccctaatccaaacctaatttttccctccattgcattagcattaactctttc--taaatgctaatcctaatcagcatt 209  Q
    |||||||||||| ||||| ||||||||||||  ||||||||||||||||||||||  || | |||||||| |||  ||| ||||||||||||||| ||||    
T  7810064 ttgtttggtcaagctattgtttaccctaatcttaacctaatttttccctccattg-tttcggattaactccttctataagtgctaatcctaatcaacatt 7810162  T
Q  210 ccacttt 216  Q
    |||||||    
T  7810163 ccacttt 7810169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 6898822 - 6898735
Alignment:
Q  95 atctttctttctaaagcttgtttggtcaaactattatttaccctaatccaaacctaat-ttttccctccattgcattagcattaactc 181  Q
    ||||||||| |||||||||||||| |||| |||||  | |||||||||  |||||||| |||||| |||||||  |||||||||||||    
T  6898822 atctttcttactaaagcttgtttgatcaagctattggtaaccctaatcttaacctaatattttccgtccattgtgttagcattaactc 6898735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 27067873 - 27067920
Alignment:
Q  94 aatctttctttctaaagcttgtttggtcaaactattatttaccctaat 141  Q
    |||||||||| ||||||||||||||||||||||||  | |||||||||    
T  27067873 aatctttcttactaaagcttgtttggtcaaactatcctataccctaat 27067920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 12094926 - 12094856
Alignment:
Q  94 aatctttctttctaaagcttgtttggtcaaactattatttaccctaatccaaacctaat-ttttccctcca 163  Q
    |||||||||| ||||||||||||||||||| ||||||   ||||||||   |||||||| |||||||||||    
T  12094926 aatctttcttactaaagcttgtttggtcaagctattagaaaccctaattttaacctaatattttccctcca 12094856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 26840415 - 26840536
Alignment:
Q  95 atctttctttctaaagcttgtttggtcaaactattatttaccctaatccaaacctaatttttccctccattgcattagcattaactctttctaaatgcta 194  Q
    ||||||||||||||||||||||||||||| | || ||| |||||||||  |||||| |||||||||||      ||| ||||||||| |||||| ||  |    
T  26840415 atctttctttctaaagcttgtttggtcaagccatcattaaccctaatcttaacctactttttccctcccaaatcttaacattaactccttctaagtgtaa 26840514  T
Q  195 atcctaatcagcattccacttt 216  Q
     ||||||||| |||||||||||    
T  26840515 ttcctaatcaacattccacttt 26840536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 26839989 - 26840110
Alignment:
Q  95 atctttctttctaaagcttgtttggtcaaactattatttaccctaatccaaacctaatttttccctccattgcattagcattaactctttctaaatgcta 194  Q
    |||||||||||||||| ||||||| |||| | || ||| |||||||||  |||||| |||||||||||      ||| ||||||||| |||||| ||  |    
T  26839989 atctttctttctaaagtttgtttgatcaagccatcattaaccctaatcttaacctactttttccctcccaaatcttaacattaactccttctaagtgtaa 26840088  T
Q  195 atcctaatcagcattccacttt 216  Q
     ||||||||| |||||||||||    
T  26840089 ttcctaatcaacattccacttt 26840110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 31665699 - 31665653
Alignment:
Q  95 atctttctttctaaagcttgtttggtcaaactattatttaccctaat 141  Q
    ||||||||| ||||||||||||||||||| |||||| | ||||||||    
T  31665699 atctttcttactaaagcttgtttggtcaagctattagtaaccctaat 31665653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 9889023 - 9888950
Alignment:
Q  91 caaaatctttctttctaaagcttgtttggtcaaactattatttaccctaa-tccaaacctaatttttccctcca 163  Q
    ||||||||| |||  |||||||||| ||||||| ||||| |||||||||| || ||||||||| ||||||||||    
T  9889023 caaaatcttacttattaaagcttgtctggtcaagctattgtttaccctaattctaaacctaatatttccctcca 9888950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 4966451 - 4966509
Alignment:
Q  106 taaagcttgtttggtcaaactattatttaccctaa-tccaaacctaatttttccctcca 163  Q
    |||||||||| ||||||| ||||| |||||||||| || ||||||||| ||||||||||    
T  4966451 taaagcttgtctggtcaagctattgtttaccctaattctaaacctaatatttccctcca 4966509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 42315342 - 42315388
Alignment:
Q  95 atctttctttctaaagcttgtttggtcaaactattatttaccctaat 141  Q
    ||||||||| ||||||||||||||||||| |||||| | ||||||||    
T  42315342 atctttcttactaaagcttgtttggtcaagctattagtaaccctaat 42315388  T

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