View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20869_low_2 (Length: 845)
Name: NF20869_low_2
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 708; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 21 - 818
Target Start/End: Original strand, 3957012 - 3957808
Alignment:
| Q |
21 |
agcatcaaactaggaaattgaaggtctcttagagggccatacaagcaaggttgtaactaattaagcatcagagagctttgtgaccttagcaagacagttg |
120 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3957012 |
agcatcaaactaggaaattgaagatctcttagagggccatacaagcaaggttgtaactaattaagcatcagagagctttgtgaccttagcaagacagttg |
3957111 |
T |
|
| Q |
121 |
tctgttggcttaatatatggcaaactagtaagtggacattctgggtttatccgcttcaacctacaaaattttcnnnnnnntttagaatattccattacta |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3957112 |
tctgttggcttaatatatggcaaactagtaagtggacattctgggtttattcgctccaacctacaaaatttaaaaaaaaatttagaatattccattacta |
3957211 |
T |
|
| Q |
221 |
tatatataacatccatcatctcaattctgaaatggattagttaagcatgaatgtaaaatgtttgatttnnnnnnngaaagtgatagagaagtaatactaa |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3957212 |
tatatataacatccatcatctcaattctgaaatggactagttaagcatgaatgtaaaatgtttgatttaaaaaaa-aaagtgatagagaagtaatactaa |
3957310 |
T |
|
| Q |
321 |
cttgtaattaaggacgaaataatgtagaaatatgagcatttcatatttgcttaagtctcttccgggacaaagtcgccgacccatcccgaaaggaagaaag |
420 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3957311 |
cttgtaattaaggacgaaataatgtaaaaatatgagcatttcatatttgcttaagtctcttcccggacaaagtcgccgacctatcccgaaaggaagaaag |
3957410 |
T |
|
| Q |
421 |
gtccctgttgtgggattatgatcctacgcatataattaactcataagtttaatgaatcatcatcaatatgtatttgttgaattgcttatatattaatcca |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3957411 |
gtccctgttgtgggattatgatcctacgcatataattaactcataagtttaatgaatcatcatcaatatgtatttgttgaattgcttatatattaatcca |
3957510 |
T |
|
| Q |
521 |
acttacattccatcttgatggattaaattcttctggattcgagtgatgctcaggagccatatgcatagcgtttagccagactaacactttccatcccttt |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3957511 |
acttacattccatcttgatggattaaattcgtctggattcgagtgatgctcaggagccatatgcatagcgtttagccagactaacactttccatcccttt |
3957610 |
T |
|
| Q |
621 |
ggaatgagataacctaaagttattgagcaaaagacacattaaattcattattcatttttaataatcggaagcagctagaaacaaagtacaaggaatataa |
720 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3957611 |
ggaatgagataacctaaagttattgagcaaaagacacattaaattcattattcatttttaataatcggaagcagctagaaacaaagtacaaggaatataa |
3957710 |
T |
|
| Q |
721 |
caaaaccattgatgtttgcatcagttgttgcctctcgaaaagttgcaaagacactggtgatgcgtaatgtttcatcaaaaacctgcaatacacacacg |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3957711 |
caaaaccattgatgtttgcatcagttgttgcctctcgaaaagttgcaaagacactggtgatgcgtaatgtttcatcaaaaacctgcaatacacacacg |
3957808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 5654339 - 5654289
Alignment:
| Q |
313 |
aatactaacttgtaattaaggacgaaataatgtagaaatatgagcatttca |
363 |
Q |
| |
|
|||||| ||||||||||||||| |||||| |||||||||||| ||||||| |
|
|
| T |
5654339 |
aatacttacttgtaattaaggatgaaatagtgtagaaatatggtcatttca |
5654289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 3e-35; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 522 - 804
Target Start/End: Original strand, 125587 - 125870
Alignment:
| Q |
522 |
cttacattccatcttgatggattaaattcttctggattcgagtgatgctcaggagccatatgcatagcgtttagccagactaacactttccatccctttg |
621 |
Q |
| |
|
||||||| |||||| | |||||||||||||| |||||| |||| || ||| ||| ||||||| | |||| ||||||| |||| |||||||||||||||| |
|
|
| T |
125587 |
cttacatcccatctcgttggattaaattcttttggatttgagtaatactcgggatccatatgaagagcgcttagccaaactagtactttccatccctttg |
125686 |
T |
|
| Q |
622 |
gaatgagataacctaaagttattgagcaaaaga-cacattaaattcattattcatttttaataatcggaagcag-ctagaaacaaagtacaaggaatata |
719 |
Q |
| |
|
| |||| |||||||||| ||||||||||||||| || |||||||||||||||| |||||||||| |||| || | ||||| | |||||| ||| |
|
|
| T |
125687 |
gtatgaaataacctaaaattattgagcaaaagaccatattaaattcattattcccttttaataatacgaagaagtattctaacaagatgtaaggaaaata |
125786 |
T |
|
| Q |
720 |
acaaaaccattgatgtttgcatcagttgttgcctctcgaaaagttgcaaagacactggtgatgcgtaatgtttcatcaaaaacct |
804 |
Q |
| |
|
|| ||||||||||||||| ||||| ||| |||||||||||||| || ||||| | || | ||||| ||||||||||| ||||| |
|
|
| T |
125787 |
ac-aaaccattgatgtttacatcaattgctgcctctcgaaaagctgaaaagatagtgatatggcgtattgtttcatcaacaacct |
125870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 522 - 672
Target Start/End: Original strand, 144080 - 144229
Alignment:
| Q |
522 |
cttacattccatcttgatggattaaattcttctggattcgagtgatgctcaggagccatatgcatagcgtttagccagactaacactttccatccctttg |
621 |
Q |
| |
|
||||||| |||||| | |||||| |||||||||||||| ||||||||||| ||| ||||||| | |||| ||||||| ||||| ||||||||||| |||| |
|
|
| T |
144080 |
cttacatcccatctcgttggattgaattcttctggatttgagtgatgctctggatccatatgaagagcgcttagccaaactaatactttccatccttttg |
144179 |
T |
|
| Q |
622 |
gaatgagataacctaaagttattgagcaaaagacacattaaattcattatt |
672 |
Q |
| |
|
| |||| ||||||||| ||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
144180 |
gtatgaaataacctaatattattgaacaaaagacatatt-aattcattatt |
144229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 80 - 191
Target Start/End: Original strand, 124805 - 124916
Alignment:
| Q |
80 |
attaagcatcagagagctttgtgaccttagcaagacagttgtctgttggcttaatatatggcaaactagtaagtggacattctgggtttatccgcttcaa |
179 |
Q |
| |
|
|||||| |||||||| |||| |||||||||||||||| |||||| |||||||| |||||| |||||||||| ||||||||| || ||||| |||| ||| |
|
|
| T |
124805 |
attaagaatcagagatctttatgaccttagcaagacaattgtctattggcttagaatatgggaaactagtaattggacattcaggatttattcgctccaa |
124904 |
T |
|
| Q |
180 |
cctacaaaattt |
191 |
Q |
| |
|
|||||||||||| |
|
|
| T |
124905 |
cctacaaaattt |
124916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 467
Target Start/End: Original strand, 125039 - 125193
Alignment:
| Q |
313 |
aatactaacttgtaattaaggacgaaataatgtagaaatatgagcatttcatatttgcttaagtctcttccgggacaaagtcgccgacccatcccgaaag |
412 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| | ||||||||| |||||||| | ||||| | || |||| |
|
|
| T |
125039 |
aatactaacttgtaattaaggacaaaatagtgtagaaatatagatatttcatatttggccaggtctcttccaggacaaagccttcgacctactccaaaag |
125138 |
T |
|
| Q |
413 |
gaagaaaggtccctgttgtgggattatgatcctacgcatataattaactcataag |
467 |
Q |
| |
|
||| |||||| |||| | || |||| ||||||| || ||||| |||||||||| |
|
|
| T |
125139 |
gaataaaggttcctgatcctgggttataatcctacacacataatcaactcataag |
125193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 770
Target Start/End: Original strand, 145284 - 145352
Alignment:
| Q |
701 |
acaaagtacaaggaatataacaaaaccattgatgtttgcatcagttgttgcctctcgaaaagttgcaaag |
770 |
Q |
| |
|
|||||| |||| ||||||||||| ||||| ||||| ||||||||||||| ||||||||||||| |||| |
|
|
| T |
145284 |
acaaagaacaaaaaatataacaaa-ccatttatgttcacatcagttgttgcttctcgaaaagttgaaaag |
145352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University