View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_21 (Length: 590)
Name: NF20869_low_21
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 8035596 - 8035251
Alignment:
| Q |
19 |
aaaatttgttttgaaaacatgaattaacttttaagacatggaatacacacacaagtttcnnnnnnntatttctatctttaactttttaacttatgtgtgg |
118 |
Q |
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| T |
8035596 |
aaaatttgttttgaaaacatgaatcaacttttaaaacatcgaatacaca----agtttcaaaaagatatttttacttttaactttttaacttatgtgttg |
8035501 |
T |
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| Q |
119 |
ggcacaagttcgtattttcctttaaaaaattaagatattcgctatacacaattgcagaaattaattcattgaatatgagagaaccataatagtttacacg |
218 |
Q |
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| T |
8035500 |
ggcacgagttcatattttcctttaaaaaattaagatattcgctatgcacaattgtagaaattaattcattgaatatgagagaaccataatagtttatacg |
8035401 |
T |
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| Q |
219 |
acactctttatccttattgagtatcactttcaattatttcatataagtaaagaaaaagttgtaaataaatagtgtggcatttttataaaattactctttt |
318 |
Q |
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| T |
8035400 |
acactctttatccatgttgagtatcactttcaattatttcatataagtaaagaaaaagttgtaaataaatagtgtggcatttttataaaattactctttt |
8035301 |
T |
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| Q |
319 |
gttttttgacgtaatataaaattactcttattaatcattaaatcctgcct |
368 |
Q |
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| T |
8035300 |
gttttttgacgtaatataaaattactcttattaatcattaaatcctgcct |
8035251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 364 - 572
Target Start/End: Original strand, 6667692 - 6667900
Alignment:
| Q |
364 |
tgccttttcccttcaccaatttggctcacttttacccttcccgtaatttcttattccctatctttcactttcattcagatggggttttcacagccacacc |
463 |
Q |
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| T |
6667692 |
tgccttttcccttcaccaatttggctcacttttacccttcccgtaatttcttattccctatctttcactttcattcagatggggttttcacagccacacc |
6667791 |
T |
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| Q |
464 |
accgcttgcaaccattgccacatctccttgcaaccaccgccacttctcttcaacgggaatcctttttgctagatagtgaacaaattctgctttgcaagga |
563 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6667792 |
accgcttgcaaccactgccacatctccttgcaaccaccgccacttctcttcaacgggaatcctttttgctagatagtgaacaaattctgctttgtaagga |
6667891 |
T |
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| Q |
564 |
acaaagagc |
572 |
Q |
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| T |
6667892 |
acaaagagc |
6667900 |
T |
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