View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_25 (Length: 562)
Name: NF20869_low_25
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 43 - 546
Target Start/End: Original strand, 19855587 - 19856090
Alignment:
| Q |
43 |
aaggacacatagataagaaggaaacatgacatgattatcattagaaattaaaagcacccatttacagcatatagagaaagaagacattggactaaaacca |
142 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19855587 |
aaggacacatagataagaaggaaagatgacatgattatcattagaaattaaaagcacccatttacagcatatagagaaagaagacattggaccaaaacca |
19855686 |
T |
|
| Q |
143 |
aacatctactacttaattagcaacggttcaaagtaaattaaaactcccaacacccacttaactaataaacctaaacggtcaacaacaaaacataaattgc |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| |
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| T |
19855687 |
aacatctactacttaattagcaacggttcaaagtaaattaaaactcccaacacccacttcactgataaacctaaacggtcaacaacaaaacatgaattgc |
19855786 |
T |
|
| Q |
243 |
atttaaaattagattctaaatagaaaaaacc-tatgaaatcataaccctactaagcaaatacccttttcccaaacaaagcaaagaaaccaaaccccacaa |
341 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||| |
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| T |
19855787 |
atttaaaattagattctaaatagaaaaaaccctatgaaatcataaccctacttagcaa-tacccttttgccaaacaaagcaaataaaccaaaccccacat |
19855885 |
T |
|
| Q |
342 |
gatccatgaccaactttctcacaaaagtttggcaaattcaaacactaacattagcttagccctaggtccttggaattggaacaaccttgcacacaagtgg |
441 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19855886 |
gatccatgatcaactttctcacaaaagtttggcaaattcaaacactaacattagcttagccctaggtccttggaattggaacaaccttgcacacaagtgg |
19855985 |
T |
|
| Q |
442 |
ttttttcatctccatagaaagcttaagacattcatccaaatcaacaagtgaatcatcacatggaacccatttgaagttgtgaagtaactgagccaaccaa |
541 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||| |
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| T |
19855986 |
ttttttcatctccatagaaagcttaagacattcatccaaatcaacaagtgaatcatcacatgaaacccatttgaagttgtgaagcaactgagcaaaccaa |
19856085 |
T |
|
| Q |
542 |
agatg |
546 |
Q |
| |
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||||| |
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| T |
19856086 |
agatg |
19856090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 334 - 546
Target Start/End: Original strand, 32830085 - 32830286
Alignment:
| Q |
334 |
ccccacaagatccatgaccaactttctcacaaaagtttggcaaattcaaacactaacattagcttagccctaggtccttggaattggaacaaccttgcac |
433 |
Q |
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||||||||||||||| ||||| ||||| || ||||| |||||||||||||||||||||||| |||||||||| | || ||||||||||| |
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| T |
32830085 |
ccccacaagatccataaccaaatttcttacgaaagtcaagcaaattcaaacactaacattagc-----cctaggtcctagcaa------caaccttgcac |
32830173 |
T |
|
| Q |
434 |
acaagtggttttttcatctccatagaaagcttaagacattcatccaaatcaacaagtgaatcatcacatggaacccatttgaagttgtgaagtaactgag |
533 |
Q |
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| T |
32830174 |
agaagtggtttcttcatctccacagaaagcataagacattcatccaaatcaacaggtgaatcatcaaatggaacccatttgaagttgtgaagtaactgag |
32830273 |
T |
|
| Q |
534 |
ccaaccaaagatg |
546 |
Q |
| |
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| | ||||||||| |
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| T |
32830274 |
caagccaaagatg |
32830286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 334 - 519
Target Start/End: Complemental strand, 8748767 - 8748593
Alignment:
| Q |
334 |
ccccacaagatccatgaccaactttctcacaaaagtttggcaaattcaaacactaacattagcttagccctaggtccttggaattggaacaaccttgcac |
433 |
Q |
| |
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||||||||||||||| ||||| ||||| || ||||| |||||||||||||||||||||||| |||||||||| | || ||||||||||| |
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| T |
8748767 |
ccccacaagatccataaccaaatttcttacgaaagtcaagcaaattcaaacactaacattagc-----cctaggtcctagcaa------caaccttgcac |
8748679 |
T |
|
| Q |
434 |
acaagtggttttttcatctccatagaaagcttaagacattcatccaaatcaacaagtgaatcatcacatggaacccatttgaagtt |
519 |
Q |
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| T |
8748678 |
acaagtggtttcttcatctccacagaaagcataagacattaatccaaatcaataggtgaatcatcacatggaacccatttgaagtt |
8748593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 458 - 546
Target Start/End: Complemental strand, 35081224 - 35081136
Alignment:
| Q |
458 |
gaaagcttaagacattcatccaaatcaacaagtgaatcatcacatggaacccatttgaagttgtgaagtaactgagccaaccaaagatg |
546 |
Q |
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|||||| ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
35081224 |
gaaagcataagacattaatccaaatcaataggtgaatcatcacatggaacccatttgaagttgtgaagtaactgagcaagccaaagatg |
35081136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 421 - 497
Target Start/End: Original strand, 39427803 - 39427879
Alignment:
| Q |
421 |
aacaaccttgcacacaagtggttttttcatctccatagaaagcttaagacattcatccaaatcaacaagtgaatcat |
497 |
Q |
| |
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|||||||||||||||||| |||| |||||||||| | ||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
39427803 |
aacaaccttgcacacaagcagtttcttcatctccacataaagcataagatattcatccaaatcaacaggtgaatcat |
39427879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 396
Target Start/End: Complemental strand, 35081319 - 35081257
Alignment:
| Q |
334 |
ccccacaagatccatgaccaactttctcacaaaagtttggcaaattcaaacactaacattagc |
396 |
Q |
| |
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||||||||||| ||| ||||| ||||| || ||||| |||||||||||||||||||||||| |
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| T |
35081319 |
ccccacaagattcataaccaaatttcttacgaaagtcaagcaaattcaaacactaacattagc |
35081257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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