View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_29 (Length: 487)
Name: NF20869_low_29
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 10 - 469
Target Start/End: Complemental strand, 53720241 - 53719783
Alignment:
| Q |
10 |
aagaatatgggcaatatctccaataatcacatttttatcctcttctgatgttccttttttctaagatggaataaattctgagtgacaccacaaaggcaca |
109 |
Q |
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| T |
53720241 |
aagagtatggtcaatatctccaataatcacatttttatcctcttctgatgttccttttttctaagatggaataaattctgagtgacaccacaaaggcaca |
53720142 |
T |
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| Q |
110 |
aaagatatgatttaatcttcctcccttttgtcactcgatacgtcgcactcatcacacccacaaccataaacccacgcccttagaaaatctctcaaaaccc |
209 |
Q |
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| T |
53720141 |
aaagatatgatttaatcttcctcccttttgtcactcgatacgtcgcactcatcacacccacaaccataaacccacgcccttagaaaatctctcaaaaccc |
53720042 |
T |
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| Q |
210 |
caaatattaattatacacaaagaacaaactcccacacaaataattaccacttcctttttctatatttgcatttatgagagcaactccatttttacttgcc |
309 |
Q |
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| T |
53720041 |
caaatattaattatacacaa-gaacaaactcccacacaaataattaccacttcctttttctatatttgcatttatgagagcaactccatttttacttgcc |
53719943 |
T |
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| Q |
310 |
ttatttattgcttcaaatctaaccattcatgattcatccatcctctaccacacaatttaatgttttaatctctttcacgaatttgaattcaaaacaacaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53719942 |
ttatttattgcttcaaatctaaccattcatgattcatccatcctctaccacacaatttaatgttttaatctctttcacgaatttgaattcaaaacaacaa |
53719843 |
T |
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| Q |
410 |
agacaaaagaaatcaagatcggttgataccacattcattttctttgttttatggtgtctc |
469 |
Q |
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| T |
53719842 |
agacaaaagaaatcaagatcggttgataccacattcattttctttgttttatggtgtctc |
53719783 |
T |
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