View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_30 (Length: 483)
Name: NF20869_low_30
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 4006765 - 4007003
Alignment:
| Q |
8 |
gacatcatcaaaataataccaacgccccaaagggcttgaacgccaagcagccaagacaactacaaatgataaaa--atacgaaattgatgcaacactagc |
105 |
Q |
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| T |
4006765 |
gacatcaacaaaataataccaacgccccaaagggcttgaacgccaagcagccaagacaactacaaatgataaaaaaatacgaaattgatgcaacactagc |
4006864 |
T |
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| Q |
106 |
agtccagcaagcaagatacaacgtcaaacggatcccaaaatgccacaacactgcagcagaactagaacatcagagcaggaccggaacagctgaaggtcag |
205 |
Q |
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| T |
4006865 |
agtccagcaagcaagatacaacgtcaaacggatcccaaaatgccacaacactgcagcagaactagaacatcagagcaggactggaacagctgaaggtcag |
4006964 |
T |
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| Q |
206 |
aagaaagcaagagctgaacctaacccctttgacttcaac |
244 |
Q |
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| T |
4006965 |
aagaaagcaacagctgaacctaacccttttgacttcaac |
4007003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 335 - 412
Target Start/End: Complemental strand, 4571788 - 4571712
Alignment:
| Q |
335 |
atctccaggctcagtttgtccaaactatgtaagaatcaaagatgtaccaaatgaagaaccaagaatgatggcaagtaa |
412 |
Q |
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| T |
4571788 |
atctccaggatcagtttgtcaaacctatgtaagaatcaaagatgtatcaaa-gaagaaccaagaatgatggcaagtaa |
4571712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 10220263 - 10220223
Alignment:
| Q |
334 |
tatctccaggctcagtttgtccaaactatgtaagaatcaaa |
374 |
Q |
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| T |
10220263 |
tatctccaggatcagtttgtccaacctatgtaagaaccaaa |
10220223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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