View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20869_low_33 (Length: 446)

Name: NF20869_low_33
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20869_low_33
NF20869_low_33
[»] chr7 (2 HSPs)
chr7 (50-261)||(8694745-8694956)
chr7 (260-434)||(8694545-8694719)
[»] chr3 (48 HSPs)
chr3 (12-261)||(17749388-17749637)
chr3 (12-261)||(19050708-19050957)
chr3 (274-434)||(28047509-28047669)
chr3 (274-438)||(17749184-17749348)
chr3 (274-438)||(19050504-19050668)
chr3 (45-248)||(27464435-27464638)
chr3 (260-410)||(28079482-28079632)
chr3 (263-434)||(11408875-11409046)
chr3 (263-434)||(27909879-27910050)
chr3 (50-256)||(28472379-28472585)
chr3 (50-256)||(28492420-28492626)
chr3 (49-237)||(27909638-27909826)
chr3 (271-434)||(27998667-27998830)
chr3 (50-233)||(28177877-28178060)
chr3 (271-409)||(28130039-28130177)
chr3 (50-238)||(27998431-27998619)
chr3 (43-238)||(11408628-11408823)
chr3 (50-236)||(28129791-28129977)
chr3 (50-236)||(28143719-28143905)
chr3 (260-434)||(28178105-28178279)
chr3 (50-256)||(28513401-28513607)
chr3 (274-434)||(27962960-27963120)
chr3 (272-404)||(28143968-28144100)
chr3 (42-189)||(27962701-27962848)
chr3 (263-405)||(28492244-28492386)
chr3 (51-236)||(28079246-28079431)
chr3 (263-405)||(28472203-28472345)
chr3 (263-440)||(28513190-28513367)
chr3 (274-408)||(27464248-27464382)
chr3 (50-209)||(27434870-27435029)
chr3 (123-260)||(26117292-26117429)
chr3 (123-260)||(26145296-26145433)
chr3 (51-182)||(28047273-28047404)
chr3 (50-238)||(27952010-27952198)
chr3 (123-260)||(26239556-26239693)
chr3 (123-261)||(18081280-18081418)
chr3 (120-190)||(26624394-26624464)
chr3 (276-408)||(26145121-26145253)
chr3 (130-233)||(26183763-26183866)
chr3 (324-403)||(26625563-26625642)
chr3 (123-185)||(27343891-27343953)
chr3 (123-189)||(27370189-27370255)
chr3 (123-180)||(18723481-18723538)
chr3 (265-374)||(27434675-27434784)
chr3 (124-248)||(27401421-27401545)
chr3 (130-233)||(26212370-26212473)
chr3 (124-190)||(18031534-18031600)
chr3 (276-386)||(26239403-26239513)
[»] chr4 (6 HSPs)
chr4 (274-434)||(9330120-9330280)
chr4 (274-434)||(9383903-9384063)
chr4 (43-256)||(9330325-9330538)
chr4 (43-256)||(9384108-9384321)
chr4 (346-434)||(9329826-9329914)
chr4 (346-434)||(9383609-9383697)
[»] chr5 (2 HSPs)
chr5 (50-256)||(26027270-26027476)
chr5 (274-333)||(26027166-26027225)
[»] scaffold0067 (2 HSPs)
scaffold0067 (50-241)||(23797-23988)
scaffold0067 (266-403)||(24040-24177)
[»] scaffold1344 (1 HSPs)
scaffold1344 (123-185)||(578-640)
[»] scaffold0854 (1 HSPs)
scaffold0854 (123-180)||(4533-4590)
[»] scaffold0043 (1 HSPs)
scaffold0043 (123-180)||(73305-73362)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 50 - 261
Target Start/End: Complemental strand, 8694956 - 8694745
Alignment:
Q  50 ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgagat 149  Q
    ||||||| ||| ||| |||||| ||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8694956 ttttcctttctcaaataacacttaagtactgtatgcaagcagcagaggttcttagactaagaagaatcgaggggggatggagaaatatcatacctgagat 8694857  T
Q  150 tgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagacactaagcatattgattctcat 249  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8694856 tgttcctatcgatcatggtatgaatgatctagttgagcttcatttaagatgcatttcacaactacaatgcctcttagacactaagcatattgattctcat 8694757  T
Q  250 gtatcaattgtc 261  Q
    ||||||||||||    
T  8694756 gtatcaattgtc 8694745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 260 - 434
Target Start/End: Complemental strand, 8694719 - 8694545
Alignment:
Q  260 tcaaaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacattt 359  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8694719 tcaaaggaatggataatttggaagaattgtgcaatggtcctctttcctttgactctctgaaaagtttagagaagctgtacatcaaggattgtaaacattt 8694620  T
Q  360 gcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| ||| |||||| ||||    
T  8694619 gcaaagcttatttaagtgcaacctaaacctattcaatctaaagagcgtgtcgttgaaaagatgtccgatgttgat 8694545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 17749637 - 17749388
Alignment:
Q  12 atcatcaaagtgtgtgtttcttaaagttagagatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaaga 111  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17749637 atcatcaaagtgtgtgtttcttaaagttagaattgacattttcctatctgaaacaacactcaagtactgtatgcaagaagcagaggtgcttaaactaaga 17749538  T
Q  112 agaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaac 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||  |  |||| |||||||||||| ||||||||||||  |||  ||  ||||||||||    
T  17749537 agaatcgaggggggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttcaattacaatttatttcacaac 17749438  T
Q  212 tacaatgcctcgtagacactaagcatattgattctcatgtatcaattgtc 261  Q
    | |  |||||| | |||||||||||||||| |||||| ||| ||| ||||    
T  17749437 tgcggtgcctcattgacactaagcatattgcttctcaagtaccaaatgtc 17749388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 19050957 - 19050708
Alignment:
Q  12 atcatcaaagtgtgtgtttcttaaagttagagatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaaga 111  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19050957 atcatcaaagtgtgtgtttcttaaagttagaattgacattttcctatctgaaacaacactcaagtactgtatgcaagaagcagaggtgcttaaactaaga 19050858  T
Q  112 agaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaac 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||  |  |||| |||||||||||| ||||||||||||  |||  ||  ||||||||||    
T  19050857 agaatcgaggggggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttcaattacaatttatttcacaac 19050758  T
Q  212 tacaatgcctcgtagacactaagcatattgattctcatgtatcaattgtc 261  Q
    | |  |||||| | |||||||||||||||| |||||| ||| ||| ||||    
T  19050757 tgcggtgcctcattgacactaagcatattgcttctcaagtaccaaatgtc 19050708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 274 - 434
Target Start/End: Original strand, 28047509 - 28047669
Alignment:
Q  274 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgcaaagcttattta 373  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  28047509 aatttggaagaattgtgcaatggtcctctttcctttgactctctgaacagtttagaggagctgtccatcaaggattgtaaacatttgaaaagcttattta 28047608  T
Q  374 agtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 434  Q
    |||||||||||||||||||||||||||||||||| ||| |||||  |||||||||| ||||    
T  28047609 agtgcaacctaaacctattcaatctaaagagtgtatcgttggaaggatgcccgatgttgat 28047669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 274 - 438
Target Start/End: Complemental strand, 17749348 - 17749184
Alignment:
Q  274 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgcaaagcttattta 373  Q
    |||||| ||||||||| |||||  |||||||| ||||||||||| || |||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  17749348 aatttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttattta 17749249  T
Q  374 agtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgatgtcc 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  17749248 agtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaaaatgcccgatgttgatgtcc 17749184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 274 - 438
Target Start/End: Complemental strand, 19050668 - 19050504
Alignment:
Q  274 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgcaaagcttattta 373  Q
    |||||| ||||||||| |||||  |||||||| ||||||||||| || |||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  19050668 aatttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttattta 19050569  T
Q  374 agtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgatgtcc 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  19050568 agtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaaaatgcccgatgttgatgtcc 19050504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 45 - 248
Target Start/End: Complemental strand, 27464638 - 27464435
Alignment:
Q  45 tgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacct 144  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||| ||||||||||||||||| |||||||||    
T  27464638 tgacattttcctatctgaaacaacactcaagtactgtatgcaagaagcagaggttcttagactaacaagaatggaggggggatggagaaacatcatacct 27464539  T
Q  145 gagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagacactaagcatattgatt 244  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||  ||| | || |||||||||  | || |||||| | |||||| |||||| |||||    
T  27464538 gagattgttcctatggatcatggtatgaatgatctagtcgagcttaatttgatatccatttcacagttgcactgcctcattgacactcagcatactgatt 27464439  T
Q  245 ctca 248  Q
    ||||    
T  27464438 ctca 27464435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 260 - 410
Target Start/End: Original strand, 28079482 - 28079632
Alignment:
Q  260 tcaaaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacattt 359  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| |||||||||  ||||||||||||||    
T  28079482 tcaaaggaatggataatttggaagaattgttcaatggtcctctttcctttgactctctgaacagtttagagaagttgtccatcagtgattgtaaacattt 28079581  T
Q  360 gcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtc 410  Q
    | ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28079582 gaaaagcttatttaagtgcaaactaaacctattcaatctaaagagtgtgtc 28079632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 263 - 434
Target Start/End: Original strand, 11408875 - 11409046
Alignment:
Q  263 aaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgca 362  Q
    ||||||||||||||||||||||||||| |||||   |||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |    
T  11408875 aaggaatggataatttggaagaattgttcaatggctctctttcctttgactctctgaacagtttagagaagctgtccatcaaggattgtacaaatttgaa 11408974  T
Q  363 aagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 434  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| | || ||| |||||||||| ||||    
T  11408975 aagcttatttaagtgcaacctaaacctattcaatctaaagagcgtgttgttgaaaagatgcccgatgttgat 11409046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 263 - 434
Target Start/End: Original strand, 27909879 - 27910050
Alignment:
Q  263 aaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgca 362  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| | ||||||||||   |||| ||||||||| |    
T  27909879 aaggaatggataatttggaagaattgttcaatggtcctctttcctttgactctctgaacagtttagaggatctgtccatcagtaattgcaaacatttgaa 27909978  T
Q  363 aagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 434  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  27909979 aagcttatttaagtgcaaactaaacctattcaatctaaagagtgtgtcgttggaaagatgcccgatgttgat 27910050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 50 - 256
Target Start/End: Complemental strand, 28472585 - 28472379
Alignment:
Q  50 ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgagat 149  Q
    ||||||||| |||||||||||||||||| ||||| |||||||||||||| |||| ||||||||| || |||||||||||||||||||| || ||||||||    
T  28472585 ttttcctatgtgaaacaacactcaagtattgtatgcaagaagcagaggttcttagactaagaaggatggaggggggatggagaaatatgatgcctgagat 28472486  T
Q  150 tgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagacactaagcatattgattctcat 249  Q
    ||||||||| || |||||||||||||||||||| |||||| |||| ||  | ||||||||||||||||||||| | |||||||| |||| ||| ||||      
T  28472485 tgttcctatggaccatggtatgaatgatctagtcgagcttagtttgagtagtatttcacaactacaatgcctcattgacactaaacatactgaatctcta 28472386  T
Q  250 gtatcaa 256  Q
    |||||||    
T  28472385 gtatcaa 28472379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 50 - 256
Target Start/End: Complemental strand, 28492626 - 28492420
Alignment:
Q  50 ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgagat 149  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| |||  ||||||||| || |||||||||||||||||||| || ||||||||    
T  28492626 ttttcctatctgaaacaacactcaagtattgtatgcaagaagcagaggttcttggactaagaaggatggaggggggatggagaaatatgatgcctgagat 28492527  T
Q  150 tgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagacactaagcatattgattctcat 249  Q
    ||||||||| |||||||||||||||||||||||  ||||| |||| ||  | ||||||||||||||||||||| | |||||||| |||| ||| ||||      
T  28492526 tgttcctatggatcatggtatgaatgatctagtcaagcttagtttgagtagtatttcacaactacaatgcctcattgacactaaacatactgaatctcta 28492427  T
Q  250 gtatcaa 256  Q
    |||||||    
T  28492426 gtatcaa 28492420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 49 - 237
Target Start/End: Original strand, 27909638 - 27909826
Alignment:
Q  49 attttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgaga 148  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27909638 attttcctatctgaaacaacactcaagtactgtatgcaagaagcagaggttattagactaagaagaatcgaggggggatggagaaatatcatacctgaga 27909737  T
Q  149 ttgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagacactaagcat 237  Q
    |  ||||| |  | |||||||||||||||||||||||||||   || |||| |||||||||| |||| |||||  | ||||||||||||    
T  27909738 tgattcctttgaaacatggtatgaatgatctagttgagcttgaattgagatccatttcacaattacagtgccttattgacactaagcat 27909826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 271 - 434
Target Start/End: Original strand, 27998667 - 27998830
Alignment:
Q  271 gataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgcaaagcttat 370  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||   |||||||||||||| |||||||||    
T  27998667 gataatttggaagaattatgcaatggtcctctttcctttgactctctgaacagtttagagaagctgtacatcatcaattgtaaacatttgaaaagcttat 27998766  T
Q  371 ttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 434  Q
    |||||||||| ||||||||||||||||||||||| |||| |||||||  |||||||||| ||||    
T  27998767 ttaagtgcaaactaaacctattcaatctaaagagcgtgttgctggaaggatgcccgatgttgat 27998830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 50 - 233
Target Start/End: Original strand, 28177877 - 28178060
Alignment:
Q  50 ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgagat 149  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||| |||||||||||||||| |||||||| ||| ||||||||||    
T  28177877 ttttcctatctgaaacaacactcaagtattgtatgcaagaagcagaggttcttgaactaggaagaatcgagggggggtggagaaacatcgtacctgagat 28177976  T
Q  150 tgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagacactaa 233  Q
    ||||||| | ||||||||||||||||||||| | |||||| |||| |||| |||||||||| |||| |||||| | ||||||||    
T  28177977 tgttcctctggatcatggtatgaatgatctaatcgagcttggtttgagatccatttcacaattacagtgcctcattgacactaa 28178060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 271 - 409
Target Start/End: Original strand, 28130039 - 28130177
Alignment:
Q  271 gataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgcaaagcttat 370  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| || || |||||||||  ||||||||||||||| |||||||||    
T  28130039 gataatttggaagaattgttcaatggtcctctttcctttgactctctgaaaagtttaaaggagttgtccatcagtgattgtaaacatttgaaaagcttat 28130138  T
Q  371 ttaagtgcaacctaaacctattcaatctaaagagtgtgt 409  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28130139 ttaagtgcaacctaaacctattcaatctaaagagtgtgt 28130177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 27998431 - 27998619
Alignment:
Q  50 ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgagat 149  Q
    ||||||||||| |||||||||||||| ||||||| |||||||||||||| |||||  |||  ||||| ||||||||| ||||||||||||||||||||||    
T  27998431 ttttcctatctaaaacaacactcaaggactgtatgcaagaagcagaggttcttaagataaatagaatggaggggggagggagaaatatcatacctgagat 27998530  T
Q  150 tgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagacactaagcata 238  Q
      ||||||| | ||||||||||||||||||||||||||||  ||| |||| |||||||||| ||||||||||| | |||||||||||||    
T  27998531 gattcctatgggtcatggtatgaatgatctagttgagcttgatttgagatccatttcacaattacaatgcctcattgacactaagcata 27998619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 43 - 238
Target Start/End: Original strand, 11408628 - 11408823
Alignment:
Q  43 gatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatac 142  Q
    ||||| |||||||||||  |||||||||||| ||| ||||| ||| || ||||||| |||| |||| ||||||||| ||||| |||||||||||||||||    
T  11408628 gatgagattttcctatccaaaacaacactcatgtattgtatgcaaaaatcagaggttcttagactaggaagaatcgtgggggaatggagaaatatcatac 11408727  T
Q  143 ctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagacactaagcata 238  Q
    |||| || |||||| | ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | ||||||| |||||    
T  11408728 ctgaaatggttcctttagatcaaggtatgaatgatctagttgagcttcatttaagatgcatttcacaactaaaatgcctcattgacactatgcata 11408823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 28129791 - 28129977
Alignment:
Q  50 ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgagat 149  Q
    |||||||| |||||| |||||||||||| ||||| |||||||||||||| |||  |||||||||||||||||||| ||||| ||| ||||||||||||||    
T  28129791 ttttcctaactgaaagaacactcaagtattgtatgcaagaagcagaggttcttgcactaagaagaatcgagggggaatggaaaaacatcatacctgagat 28129890  T
Q  150 tgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagacactaagca 236  Q
    |||||| || ||||| |||||||||||| ||||||||||||||||  ||| |||||||||| |||| |||||| | |||||||||||    
T  28129891 tgttcccatggatcaaggtatgaatgatatagttgagcttcgtttgggatccatttcacaattacagtgcctcattgacactaagca 28129977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 28143719 - 28143905
Alignment:
Q  50 ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgagat 149  Q
    |||||||| ||||||||||||||||||| || || |||||||||||||| |||| |||||||||||||||||||| ||||| ||| ||||||||||||||    
T  28143719 ttttcctaactgaaacaacactcaagtattgcatgcaagaagcagaggttcttagactaagaagaatcgagggggaatggaaaaacatcatacctgagat 28143818  T
Q  150 tgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagacactaagca 236  Q
    |||||| || ||||| |||||||||||| ||||||||||||||||  ||| |||||||||| |||| |||||| | || ||||||||    
T  28143819 tgttcccatggatcaaggtatgaatgatatagttgagcttcgtttgggatccatttcacaattacagtgcctcattgatactaagca 28143905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 260 - 434
Target Start/End: Original strand, 28178105 - 28178279
Alignment:
Q  260 tcaaaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacattt 359  Q
    ||||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||    
T  28178105 tcaaaggaatggataatttagaagaattgttcaatggtcctgtttcctttgactctctgaacagtttagagaagctgtccatcaatgaatgtaaacattt 28178204  T
Q  360 gcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 434  Q
      |||||||||||||||||||||||||||| | ||||||||||||| | ||  |||||  |||||||||| ||||    
T  28178205 aaaaagcttatttaagtgcaacctaaacctctgcaatctaaagagtctttcattggaagaatgcccgatgttgat 28178279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 50 - 256
Target Start/End: Complemental strand, 28513607 - 28513401
Alignment:
Q  50 ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgagat 149  Q
    |||||||||||||||||||||||| ||| ||||| |||||||| ||| | || | |||||||||||| |||||||||||||||||||| || ||||| ||    
T  28513607 ttttcctatctgaaacaacactcaggtattgtatgcaagaagctgagattctaagactaagaagaatggaggggggatggagaaatatgattcctgaaat 28513508  T
Q  150 tgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagacactaagcatattgattctcat 249  Q
    ||||||||| |||  |||||||||||||||||| ||||||  ||| ||||||||||||||||||||||||||| | ||||| || ||||| || |||||     
T  28513507 tgttcctatggattgtggtatgaatgatctagtcgagcttactttgagatgcatttcacaactacaatgcctcattgacaccaaacatatcgaatctcaa 28513408  T
Q  250 gtatcaa 256  Q
    |||||||    
T  28513407 gtatcaa 28513401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 274 - 434
Target Start/End: Original strand, 27962960 - 27963120
Alignment:
Q  274 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgcaaagcttattta 373  Q
    |||||||||||||||| ||||| |||| | |||||||||||| |||| ||||||||||| || |||||  | ||||||||||||||| ||||||||||||    
T  27962960 aatttggaagaattgttcaatggtcctttgtcctttgactctttgaacagtttagagaatctttccattgaagattgtaaacatttgaaaagcttattta 27963059  T
Q  374 agtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 434  Q
    |||||||||||||||||||||||||||||||||||||  |||||  |||||||||| ||||    
T  27963060 agtgcaacctaaacctattcaatctaaagagtgtgtcattggaaggatgcccgatgttgat 27963120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 272 - 404
Target Start/End: Original strand, 28143968 - 28144100
Alignment:
Q  272 ataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgcaaagcttatt 371  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||   |||||||||| |||||||| | ||||||||||||||| ||||||||||    
T  28143968 ataatttggaagaattgttcaatggtcctctttcctttgactctctgaactttttagagaagttgtccatccaagattgtaaacatttgaaaagcttatt 28144067  T
Q  372 taagtgcaacctaaacctattcaatctaaagag 404  Q
    ||||||||| |||||||||||||||||||||||    
T  28144068 taagtgcaaactaaacctattcaatctaaagag 28144100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 42 - 189
Target Start/End: Original strand, 27962701 - 27962848
Alignment:
Q  42 agatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcata 141  Q
    |||||| ||||||||||| |||||| ||| |||||||||| | |||||||||||| | |||  |||||||||||| ||||||||||||||||||||||||    
T  27962701 agatgatattttcctatccgaaacatcacacaagtactgtttgcaagaagcagagtttcttggactaagaagaatggaggggggatggagaaatatcata 27962800  T
Q  142 cctgagattgttcctatcgatcatggtatgaatgatctagttgagctt 189  Q
    ||||||||||||||||| || |||||||||||||||||||| ||||||    
T  27962801 cctgagattgttcctatggagcatggtatgaatgatctagtcgagctt 27962848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 263 - 405
Target Start/End: Complemental strand, 28492386 - 28492244
Alignment:
Q  263 aaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgca 362  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||||||| ||||||||  ||||||||||||||||| |    
T  28492386 aaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaacagtttagagaatctgtccattgaggattgtaaacatttgaa 28492287  T
Q  363 aagcttatttaagtgcaacctaaacctattcaatctaaagagt 405  Q
    || ||||||| |||||||| ||||||| | |||||||||||||    
T  28492286 aatcttatttgagtgcaacataaacctctgcaatctaaagagt 28492244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 28079246 - 28079431
Alignment:
Q  51 tttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgagatt 150  Q
    |||||||||  ||||||||||| |||||||| | |||||||||||||| |||| |||  || ||||||| ||||| |||||||||||||||||||| |||    
T  28079246 tttcctatccaaaacaacactcgagtactgttttcaagaagcagaggttcttagacttggaggaatcgaaggggggtggagaaatatcatacctgatatt 28079345  T
Q  151 gttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagacactaagca 236  Q
    ||||| || ||||||||||||||||||||||||||||||   || |||| |||||||||| |||| |||||| | |||||||||||    
T  28079346 gttccaatggatcatggtatgaatgatctagttgagcttgaattgagatccatttcacaattacagtgcctcattgacactaagca 28079431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 263 - 405
Target Start/End: Complemental strand, 28472345 - 28472203
Alignment:
Q  263 aaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgca 362  Q
    ||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||| ||||||||||| ||||||||  ||||||||||||||||| |    
T  28472345 aaggaatggataatttggaagaattgttcagcggtcctctttcctttgactctctgaacagtttagagaatctgtccattgaggattgtaaacatttgaa 28472246  T
Q  363 aagcttatttaagtgcaacctaaacctattcaatctaaagagt 405  Q
    || ||||||| |||||||| ||||||| | |||||||||||||    
T  28472245 aatcttatttgagtgcaacataaacctctgcaatctaaagagt 28472203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 263 - 440
Target Start/End: Complemental strand, 28513367 - 28513190
Alignment:
Q  263 aaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgca 362  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||||||| ||||||||  || ||||||||| |||| |    
T  28513367 aaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaacagtttagagaatctgtccattgagaattgtaaacgtttgaa 28513268  T
Q  363 aagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgatgtccat 440  Q
    || ||||||  |||||||| ||||||| | ||||||||||||| | ||  |||||  |||||||||| |||| |||||    
T  28513267 aatcttattcgagtgcaacataaacctctgcaatctaaagagtctttcattggaacgatgcccgatgttgatctccat 28513190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 274 - 408
Target Start/End: Complemental strand, 27464382 - 27464248
Alignment:
Q  274 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgcaaagcttattta 373  Q
    |||||||||||||||| ||||| |||| |||||||||||||||| || | |||||||||| ||||||||||| | ||| |||||||||| ||||||||||    
T  27464382 aatttggaagaattgttcaatggtcctgtttcctttgactctctaaacaatttagagaagttgtccatcaagaactgtgaacatttgcagagcttattta 27464283  T
Q  374 agtgcaacctaaacctattcaatctaaagagtgtg 408  Q
    ||||||| |||||||| | |||| | |||||||||    
T  27464282 agtgcaagctaaacctctgcaatttgaagagtgtg 27464248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 27435029 - 27434870
Alignment:
Q  50 ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgagat 149  Q
    ||||| |||||||||||||||| | ||| ||| | |||||||||||||| |||| |||||||||  ||||| ||| |||||||||| ||||||| |||||    
T  27435029 ttttcttatctgaaacaacactaaggtattgtctgcaagaagcagaggttcttagactaagaagcttcgagagggaatggagaaatctcatacccgagat 27434930  T
Q  150 tgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcaca 209  Q
    |||| |||| ||||| ||||||||| ||  |||||| ||| |||| || ||||| |||||    
T  27434929 tgtttctatggatcaaggtatgaattatacagttgaacttagtttgagttgcatctcaca 27434870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 123 - 260
Target Start/End: Complemental strand, 26117429 - 26117292
Alignment:
Q  123 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 222  Q
    |||||||| |||| |||| || |||||||||||||| ||| | ||||||||||||||| |||||||| ||||  ||   |||||||||||||| |||||     
T  26117429 gggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattgagctttgtttgggagaaatttcacaactacagtgcctt 26117330  T
Q  223 gtagacactaagcatattgattctcatgtatcaattgt 260  Q
    ||||||||||| |||||| ||||||| ||| |||||||    
T  26117329 gtagacactaaacatattaattctcaagtaccaattgt 26117292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 123 - 260
Target Start/End: Complemental strand, 26145433 - 26145296
Alignment:
Q  123 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 222  Q
    |||||| |||||| |||| || ||||| |||||||| ||||| ||||||||||||||| ||||||||| | | |||   |||||||||||||| |||||     
T  26145433 gggatgtagaaatctcatgcccgagatggttcctatagatcaaggtatgaatgatctaattgagcttcatctgagagaaatttcacaactacagtgccta 26145334  T
Q  223 gtagacactaagcatattgattctcatgtatcaattgt 260  Q
    ||||||||||| |||||| ||||||| ||| |||||||    
T  26145333 gtagacactaaacatattaattctcaagtaccaattgt 26145296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 28047273 - 28047404
Alignment:
Q  51 tttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgagatt 150  Q
    |||||||||  |||||||| || |||||||| | |||||||||||||| |||| ||| ||| |||| ||  || | |||||||||||||||||||| |||    
T  28047273 tttcctatccaaaacaacattcgagtactgtttgcaagaagcagaggttcttagacttagaggaattgaaaggtggtggagaaatatcatacctgatatt 28047372  T
Q  151 gttcctatcgatcatggtatgaatgatctagt 182  Q
    |||||| | ||||||||||||||| |||||||    
T  28047373 gttcctttggatcatggtatgaataatctagt 28047404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 27952010 - 27952198
Alignment:
Q  50 ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgagat 149  Q
    |||||||||||||||||||||||||||||||||| |||  ||| ||| | |||||||||||||||||  |  ||||||||| |||| |||||||  | ||    
T  27952010 ttttcctatctgaaacaacactcaagtactgtatgcaaacagctgagattcttaaactaagaagaatacaaaggggatggataaatctcatacccaatat 27952109  T
Q  150 tgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagacactaagcata 238  Q
    |||| | ||  |||| |||||||   || ||| ||||||| ||||    |||||||||||||| || | |||| | |||||||||||||    
T  27952110 tgtttcgatgcatcaaggtatgagaaatatagctgagcttagtttgcattgcatttcacaacttcagttcctcattgacactaagcata 27952198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 260
Target Start/End: Complemental strand, 26239693 - 26239556
Alignment:
Q  123 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 222  Q
    |||||||| |||| |||| || |||||||||||||| ||| | ||||||||||||||| || |||||| | | | |   |||||||||||||| | |||     
T  26239693 gggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattaagcttcatctgaaagaaatttcacaactacagtacctt 26239594  T
Q  223 gtagacactaagcatattgattctcatgtatcaattgt 260  Q
    ||||||||||| |||||| ||||||| ||| |||||||    
T  26239593 gtagacactaaacatattaattctcaagtaccaattgt 26239556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 123 - 261
Target Start/End: Complemental strand, 18081418 - 18081280
Alignment:
Q  123 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 222  Q
    ||||||||||||| |||| || || ||||||||||| ||||| ||||||||||||||| ||||||||| ||| | ||    |||||||||||| | ||||    
T  18081418 gggatggagaaatctcatgccagaaattgttcctatagatcaaggtatgaatgatctaattgagcttcatttgaaatatgattcacaactacagtacctc 18081319  T
Q  223 gtagacactaagcatattgattctcatgtatcaattgtc 261  Q
     || ||| | | |||||||||||||| ||| ||| ||||    
T  18081318 atatacattgaacatattgattctcaagtaccaactgtc 18081280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 26624394 - 26624464
Alignment:
Q  120 ggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttc 190  Q
    |||||||||||||||| |||| ||||||||||||||||| || |  |||||||||||| | ||||||||||    
T  26624394 ggggggatggagaaatctcatgcctgagattgttcctatagaactaggtatgaatgatattgttgagcttc 26624464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 408
Target Start/End: Complemental strand, 26145253 - 26145121
Alignment:
Q  276 tttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgcaaagcttatttaag 375  Q
    |||||||||||| ||||||| |||  | |||||||||||  |||| | ||||||| ||||||  || ||||| ||| || ||||||||||||| |||||     
T  26145253 tttggaagaattatgcaatggtcccatctcctttgactcaatgaacactttagaggagctgtatattaaggagtgtgaaaatttgcaaagcttgtttaaa 26145154  T
Q  376 tgcaacctaaacctattcaatctaaagagtgtg 408  Q
    |||| |||||| ||   ||||||||||| ||||    
T  26145153 tgcagcctaaatctcagcaatctaaagactgtg 26145121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 26183866 - 26183763
Alignment:
Q  130 agaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagaca 229  Q
    |||||| |||| || ||||| |||||||| || || ||||||||||||||| ||||||||| |||   | | | |||||||||||| ||||| |||||||    
T  26183866 agaaatctcatgccagagatggttcctatagaacaaggtatgaatgatctaattgagcttcatttggaaggtagttcacaactacagtgccttgtagaca 26183767  T
Q  230 ctaa 233  Q
    ||||    
T  26183766 ctaa 26183763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 26625563 - 26625642
Alignment:
Q  324 tttagagaagctgtccatcaaggattgtaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaaga 403  Q
    ||||||| |||| || |||||| ||||| ||||||||||||| || ||||| ||||| |||||||| | |||||||||||    
T  26625563 tttagaggagctatcaatcaagcattgtgaacatttgcaaagtttgtttaaatgcaagctaaacctctgcaatctaaaga 26625642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 27343891 - 27343953
Alignment:
Q  123 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttga 185  Q
    ||||||||||||| |||| |||| |||| ||||||| ||| ||||||||||||||||| ||||    
T  27343891 gggatggagaaatctcatgcctgggattcttcctatggataatggtatgaatgatctaattga 27343953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 27370189 - 27370255
Alignment:
Q  123 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagctt 189  Q
    ||||||||||||| |||| |||| |||| ||||||| ||| ||||||||||| ||||| ||||||||    
T  27370189 gggatggagaaatctcatgcctgggattcttcctatagataatggtatgaataatctaattgagctt 27370255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 18723538 - 18723481
Alignment:
Q  123 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatcta 180  Q
    ||||||||||||| |||| |||| ||||||| |||| ||| |||||||||||||||||    
T  18723538 gggatggagaaatctcatgcctgggattgtttctatagataatggtatgaatgatcta 18723481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 374
Target Start/End: Complemental strand, 27434784 - 27434675
Alignment:
Q  265 ggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgcaaa 364  Q
    |||||||| |||||||||||| |||  |||| |||  |||||| ||| ||| |||    |||||||||| | || ||||||||||||||||||||| |||    
T  27434784 ggaatggaaaatttggaagaactgtttaatggtcccgtttcctctgaatctttgatgtatttagagaaggtatcaatcaaggattgtaaacatttgaaaa 27434685  T
Q  365 gcttatttaa 374  Q
    |||| |||||    
T  27434684 gcttgtttaa 27434675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 248
Target Start/End: Complemental strand, 27401545 - 27401421
Alignment:
Q  124 ggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcg 223  Q
    |||||||||||| |||| |||||| | |||||||| ||  |||| ||||||||||| ||| ||||||   |   |||   |||| ||||||| ||||||     
T  27401545 ggatggagaaatctcatgcctgaggtggttcctatagaaaatggcatgaatgatcttgttaagcttcacctgtcatggggttcagaactacagtgcctca 27401446  T
Q  224 tagacactaagcatattgattctca 248  Q
    |||||||||| ||||||||||||||    
T  27401445 tagacactaaacatattgattctca 27401421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 26212473 - 26212370
Alignment:
Q  130 agaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagaca 229  Q
    |||||| |||| || ||||| ||||||||  | || ||||||||||||||| ||||||||| |||   | | | |||||||||||| ||||| |||||||    
T  26212473 agaaatctcatgccagagatggttcctataaaacaaggtatgaatgatctaattgagcttcatttggaaggtagttcacaactacagtgccttgtagaca 26212374  T
Q  230 ctaa 233  Q
    ||||    
T  26212373 ctaa 26212370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 18031600 - 18031534
Alignment:
Q  124 ggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttc 190  Q
    |||||||||||| |||| || ||||| |||||||| ||  ||||||||||||||||  |||||||||    
T  18031600 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttc 18031534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 386
Target Start/End: Complemental strand, 26239513 - 26239403
Alignment:
Q  276 tttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgcaaagcttatttaag 375  Q
    |||||||||||| ||||||| |||  |  ||||||||||   ||| | |||||||||||| || |||||||| ||| || |||||| |||||| |||||     
T  26239513 tttggaagaattatgcaatggtcccatcgcctttgactcaacgaacaatttagagaagctatctatcaaggagtgtgaaaatttgcgaagcttgtttaaa 26239414  T
Q  376 tgcaacctaaa 386  Q
    |||| ||||||    
T  26239413 tgcagcctaaa 26239403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 274 - 434
Target Start/End: Complemental strand, 9330280 - 9330120
Alignment:
Q  274 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgcaaagcttattta 373  Q
    |||||||||||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9330280 aatttggaagaattgttcaatggtcctctttcctttgactctttgaacagtttagagaagctgtccatcaaggattgcaaacatttgcaaagcttattta 9330181  T
Q  374 agtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 434  Q
    ||||||||||||||||||||||||||||||| |||||| | |||  |||||||||| ||||    
T  9330180 agtgcaacctaaacctattcaatctaaagagcgtgtcgttagaaggatgcccgatgttgat 9330120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 274 - 434
Target Start/End: Complemental strand, 9384063 - 9383903
Alignment:
Q  274 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgcaaagcttattta 373  Q
    |||||||||||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9384063 aatttggaagaattgttcaatggtcctctttcctttgactctttgaacagtttagagaagctgtccatcaaggattgcaaacatttgcaaagcttattta 9383964  T
Q  374 agtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 434  Q
    ||||||||||||||||||||||||||||||| |||||| | |||  |||||||||| ||||    
T  9383963 agtgcaacctaaacctattcaatctaaagagcgtgtcgttagaaggatgcccgatgttgat 9383903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 43 - 256
Target Start/End: Complemental strand, 9330538 - 9330325
Alignment:
Q  43 gatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatac 142  Q
    |||||| |||||||||||||||||||||||||||| ||||| |||||| ||||||   ||| | |  | ||||||||| |||  |||||||| |||||||    
T  9330538 gatgactttttcctatctgaaacaacactcaagtattgtatgcaagaatcagagggtattagattgtgtagaatcgagagggtgtggagaaacatcatac 9330439  T
Q  143 ctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagacactaagcatattga 242  Q
    |||||||||||||| | ||||| |||||||||||||| | |||||||| ||| |||||||||| ||||||| |||||||| | ||||||| ||||| |||    
T  9330438 ctgagattgttcctttggatcaaggtatgaatgatctggctgagcttcatttgagatgcattttacaactaaaatgcctcattgacactacgcatactga 9330339  T
Q  243 ttctcatgtatcaa 256  Q
     ||||| |||||||    
T  9330338 atctcaagtatcaa 9330325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 43 - 256
Target Start/End: Complemental strand, 9384321 - 9384108
Alignment:
Q  43 gatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatac 142  Q
    |||||| |||||||||||||||||||||||||||| ||||| |||||| ||||||   ||| | |  | ||||||||| |||  |||||||| |||||||    
T  9384321 gatgactttttcctatctgaaacaacactcaagtattgtatgcaagaatcagagggtattagattgtgtagaatcgagagggtgtggagaaacatcatac 9384222  T
Q  143 ctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagacactaagcatattga 242  Q
    |||||||||||||| | ||||| |||||||||||||| | |||||||| ||| |||||||||| ||||||| |||||||| | ||||||| ||||| |||    
T  9384221 ctgagattgttcctttggatcaaggtatgaatgatctggctgagcttcatttgagatgcattttacaactaaaatgcctcattgacactacgcatactga 9384122  T
Q  243 ttctcatgtatcaa 256  Q
     ||||| |||||||    
T  9384121 atctcaagtatcaa 9384108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 346 - 434
Target Start/End: Complemental strand, 9329914 - 9329826
Alignment:
Q  346 gattgtaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 434  Q
    ||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  9329914 gattgtaaacatttgaaaagtttattcaagtgcaacataaacctattcaatctaaagagtgtgtcgttggaaagatgcccgatgttgat 9329826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 346 - 434
Target Start/End: Complemental strand, 9383697 - 9383609
Alignment:
Q  346 gattgtaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat 434  Q
    ||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  9383697 gattgtaaacatttgaaaagtttattcaagtgcaacataaacctattcaatctaaagagtgtgtcgttggaaagatgcccgatgttgat 9383609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 50 - 256
Target Start/End: Complemental strand, 26027476 - 26027270
Alignment:
Q  50 ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgagat 149  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||  | |||| ||||| ||| || ||||| || |||||||||||||| ||||||||    
T  26027476 ttttcctatctgaaacaacactcgagtattgtatgcaagaagcagaaattcttagactaacaaggattgagggagggtggagaaatatcatgcctgagat 26027377  T
Q  150 tgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagacactaagcatattgattctcat 249  Q
    ||||| ||| ||||||||||||||||||||||| ||||||  ||| |||| |||||||||| |||| | |||| |  ||||||||| || ||| |||||     
T  26027376 tgttcatatggatcatggtatgaatgatctagtcgagctttctttgagatccatttcacaattacagtacctcattaacactaagcctactgaatctcaa 26027277  T
Q  250 gtatcaa 256  Q
    |||||||    
T  26027276 gtatcaa 26027270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 274 - 333
Target Start/End: Complemental strand, 26027225 - 26027166
Alignment:
Q  274 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaag 333  Q
    |||||||||||||||| ||||| ||||||||||||||||||||| || ||||||||||||    
T  26027225 aatttggaagaattgttcaatggtcctctttcctttgactctctcaacagtttagagaag 26027166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 50 - 241
Target Start/End: Original strand, 23797 - 23988
Alignment:
Q  50 ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgagat 149  Q
    ||||| |||||||| ||||||||||||||||||| |||  | | ||||| |||| ||||||||||||||||  ||||||||||||| |||||||  ||||    
T  23797 ttttcttatctgaagcaacactcaagtactgtatgcaaacaaccgaggttcttagactaagaagaatcgagacgggatggagaaatctcataccccagat 23896  T
Q  150 tgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagacactaagcatattg 241  Q
    |||| |||| ||||| |||||||| ||| ||||||| ||| |||| || |||||||||||||| |  | |||||| ||||| ||| ||||||    
T  23897 tgtttctatggatcaaggtatgaaagatatagttgaacttagtttgagttgcatttcacaacttcggtacctcgttgacacgaaggatattg 23988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 403
Target Start/End: Original strand, 24040 - 24177
Alignment:
Q  266 gaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgtaaacatttgcaaag 365  Q
    ||||||| |||||||||||| |||  |||| |||  |||||||||||| |||||| | |||| ||||| | || ||||||||||||||||||||||||||    
T  24040 gaatggaaaatttggaagaactgtttaatggtcccgtttcctttgactttctgaagaatttacagaagatatcaatcaaggattgtaaacatttgcaaag 24139  T
Q  366 cttatttaagtgcaacctaaacctattcaatctaaaga 403  Q
    ||| ||||| | | | | |||||| | |||||||||||    
T  24140 cttgtttaaattcgagcaaaacctctgcaatctaaaga 24177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1344 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1344
Description:

Target: scaffold1344; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 578 - 640
Alignment:
Q  123 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttga 185  Q
    ||||||||||||| |||| |||| |||| ||||||| ||| ||||||||||||||||| ||||    
T  578 gggatggagaaatctcatgcctgggattattcctatagataatggtatgaatgatctaattga 640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 4590 - 4533
Alignment:
Q  123 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatcta 180  Q
    ||||||||||||| |||| |||| |||||||||||| ||| ||||||||||| |||||    
T  4590 gggatggagaaatctcatgcctgggattgttcctatagataatggtatgaattatcta 4533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 73362 - 73305
Alignment:
Q  123 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatcta 180  Q
    ||||||||||||| |||| |||| ||||||| |||| ||| |||||||||||||||||    
T  73362 gggatggagaaatctcatgcctgggattgtttctatagataatggtatgaatgatcta 73305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University