View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_34 (Length: 424)
Name: NF20869_low_34
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 406
Target Start/End: Original strand, 3770608 - 3771000
Alignment:
| Q |
14 |
atataaactaatttggtggttttgttgtgctcctcctgcaaggctctccctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaa |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3770608 |
atataaactaatttggtggttttgttgtgctcctcctgcaaggctctccctgtactagcctccatttttgagaaactattcaccaagaaaccatgagcaa |
3770707 |
T |
|
| Q |
114 |
gagacaagttcttggaatgtagaagnnnnnnnctgtaacgaacactagatcgatcatgaaaaaattcgggaggaagatcttggctacaaataggtagaca |
213 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3770708 |
gagacaagttcttggaatgtagaagaaaaaaactgtaacgaacactagatcgatcatgaaaaaattcgggaggaagatcttggctacaaataggtagaca |
3770807 |
T |
|
| Q |
214 |
acccggaaactgaataaggtcagtatgatctttgtattcacatgaaacttgttcatgcagtgtcggaaaatacaagttgaatgaagttgtcatggcagaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3770808 |
acccggaaactgaataaggtcagtatgatctttgtattcacatgaaacttgttcatgcagtgccggaaaatacaagttgaatgaagttgtcatggcagaa |
3770907 |
T |
|
| Q |
314 |
agtggaaagtatacaaaagataagatgttcaagtcttttgctatttctaatgcttgacttgcataaggatcaacaaccaatgctaccactggt |
406 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3770908 |
agtggaaagtatacaaaagataagatgttctagtcttttgctatttctaatgcttgacttgcataaggatcaacaaccaatgctaccactggt |
3771000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 406
Target Start/End: Complemental strand, 3707587 - 3707195
Alignment:
| Q |
14 |
atataaactaatttggtggttttgttgtgctcctcctgcaaggctctccctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3707587 |
atataaactaatttggtggttttgttgtgctcctcctgcaaggctctccctgtacttgcctccatttttgagaaactattcgccaagaaaccatgagcaa |
3707488 |
T |
|
| Q |
114 |
gagacaagttcttggaatgtagaagnnnnnnnctgtaacgaacactagatcgatcatgaaaaaattcgggaggaagatcttggctacaaataggtagaca |
213 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
3707487 |
gagacaagttcttggaatgtagaagaaaaatactgtaagcaacactagatcgatcatgaaaaaattcgggaggaagatctttgccgagaataggtagaca |
3707388 |
T |
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| Q |
214 |
acccggaaactgaataaggtcagtatgatctttgtattcacatgaaacttgttcatgcagtgtcggaaaatacaagttgaatgaagttgtcatggcagaa |
313 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||| |||| ||||||||| ||||||||||| |
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| T |
3707387 |
tcccggaatctgaataaggtcagtgtgatctttgtattcacatgaaacttgtttatgcagtgtcggacaatagaagtgtaatgaagttatcatggcagaa |
3707288 |
T |
|
| Q |
314 |
agtggaaagtatacaaaagataagatgttcaagtcttttgctatttctaatgcttgacttgcataaggatcaacaaccaatgctaccactggt |
406 |
Q |
| |
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||||| || |||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
3707287 |
agtgggaaatatacaaaagataagaggttcaagtctttagctatttctaatgcttgacttgcaaaaggatcaacaaccaatgctgacactggt |
3707195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 406
Target Start/End: Complemental strand, 3719096 - 3718704
Alignment:
| Q |
14 |
atataaactaatttggtggttttgttgtgctcctcctgcaaggctctccctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3719096 |
atataaactaatttggtggttttgttgagctcctcctgcaaggctctccctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaa |
3718997 |
T |
|
| Q |
114 |
gagacaagttcttggaatgtagaagnnnnnnnctgtaacgaacactagatcgatcatgaaaaaattcgggaggaagatcttggctacaaataggtagaca |
213 |
Q |
| |
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||||| |||| ||| ||||| |||| | ||| |||| | ||| |||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
3718996 |
gagacgagtttttgcaatgttgaagaaaaagcttataaggaacgcaagaacgatcatgaaaaaattcgggaggaagatcttggcctcgaataggtagaca |
3718897 |
T |
|
| Q |
214 |
acccggaaactgaataaggtcagtatgatctttgtattcacatgaaacttgttcatgcagtgtcggaaaatacaagttgaatgaagttgtcatggcagaa |
313 |
Q |
| |
|
||| |||| ||||||| | ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3718896 |
acctggaatctgaataggatcaatgtgatctttgtattcacatgaaacttgttcatgcagtgtcggaaaatacaagttgaatgaagttatcatggcagaa |
3718797 |
T |
|
| Q |
314 |
agtggaaagtatacaaaagataagatgttcaagtcttttgctatttctaatgcttgacttgcataaggatcaacaaccaatgctaccactggt |
406 |
Q |
| |
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||||| ||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
3718796 |
agtgggaagtatataaaagataagaggttcaagtctttagctatttctaatgcttgacttgcaaaaggatcaacaaccaatgctgacactggt |
3718704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 393
Target Start/End: Original strand, 3778275 - 3778648
Alignment:
| Q |
20 |
actaatttggtggttttgttgtgctcctcctgcaaggctctccctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaca |
119 |
Q |
| |
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||||||| |||| | ||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3778275 |
actaattgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaa |
3778374 |
T |
|
| Q |
120 |
agttcttggaatgtagaagnnnnnnnctgtaacgaacactagatcgatcatgaaaaaattcgggaggaagatcttggctacaaataggtagacaacccgg |
219 |
Q |
| |
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||||||||||||||||||| | |||| | |||||||||||||||||||||||| ||||| |||||||||| | |||||| | ||||||||| |
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| T |
3778375 |
agttcttggaatgtagaagaaaaaaaccgtaagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatacaacccgg |
3778474 |
T |
|
| Q |
220 |
aaactgaataaggtcagtatgatctttgtattcacatgaaacttgttcatgcagtgtcggaaaatacaagttgaatgaagttgtcatggcagaaagtgga |
319 |
Q |
| |
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|| ||||||| |||| || |||||||||||||||| ||||||||||||||| |||||||| |||| ||| || ||||||| ||||||||||||||| |
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| T |
3778475 |
aatctgaatagggtcggtgtgatctttgtattcacctgaaacttgttcatgaagtgtcggtaaatgcaaaaagagtgaagttcccatggcagaaagtggg |
3778574 |
T |
|
| Q |
320 |
aagtatacaaaagataagatgttcaagtcttttgctatttctaatgcttgacttgcataaggatcaacaaccaa |
393 |
Q |
| |
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|||||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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|
| T |
3778575 |
aagtatacgaaagataagaggtttaagtcttttgctatttctaatgcatgacttgcaaaaggatcaacaaccaa |
3778648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 33005780 - 33005884
Alignment:
| Q |
295 |
tgaagttgtcatggcagaaagtggaaagtatacaaaagataagatgttcaagtcttttgctatttctaatgcttgacttgcataaggatcaacaaccaat |
394 |
Q |
| |
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|||||||||||||||||||| || ||||| | |||||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||||||| | | |
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| T |
33005780 |
tgaagttgtcatggcagaaacagggaagtacatgaaagataagatgttgaactctttcgctatttctaatgcttggtttgcaaaaggatcaacaactatt |
33005879 |
T |
|
| Q |
395 |
gctac |
399 |
Q |
| |
|
||||| |
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|
| T |
33005880 |
gctac |
33005884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 3700619 - 3700554
Alignment:
| Q |
304 |
catggcagaaagtggaaagtatacaaaagataagatgttcaagtcttttgctatttctaatgcttg |
369 |
Q |
| |
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||||||||||||||||||||||| |||||||||| ||| || ||||||||||||||||||||||| |
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| T |
3700619 |
catggcagaaagtggaaagtatatgaaagataagaggttgaactcttttgctatttctaatgcttg |
3700554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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