View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20869_low_35 (Length: 417)

Name: NF20869_low_35
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20869_low_35
NF20869_low_35
[»] chr8 (1 HSPs)
chr8 (68-400)||(43876322-43876649)
[»] chr1 (2 HSPs)
chr1 (320-358)||(12132091-12132129)
chr1 (332-364)||(8856781-8856813)
[»] chr6 (2 HSPs)
chr6 (320-364)||(26373099-26373143)
chr6 (320-364)||(14399831-14399874)
[»] scaffold0913 (1 HSPs)
scaffold0913 (314-364)||(1279-1329)
[»] scaffold0898 (1 HSPs)
scaffold0898 (314-364)||(4272-4322)
[»] chr7 (1 HSPs)
chr7 (331-364)||(7245950-7245983)
[»] chr3 (1 HSPs)
chr3 (331-364)||(51616393-51616426)
[»] chr5 (1 HSPs)
chr5 (332-364)||(17755234-17755266)
[»] chr2 (1 HSPs)
chr2 (320-364)||(28044715-28044759)


Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 68 - 400
Target Start/End: Original strand, 43876322 - 43876649
Alignment:
Q  68 gtcacaaaacattgatcaattacgttactatacaaaaattgtacattttctgttcttaagggttctttgtttaatcttctttagctatctagtccttcct 167  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43876322 gtcacaaaacattgatcaattacgttacaatacaaaaattgtacattttctgttcttaagggttctttgtttaatcttctttagctatctagtccttcct 43876421  T
Q  168 tacttgctaatctgacatagatggcttctttaaccaatgaaaggaattgagattnnnnnnnnngtttttgttggtggtaactgcatgttgatgattatga 267  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||| |||||||||    
T  43876422 tacttgctaatctgacatggatggcttctttaaccaatgaaaggaattgagattaaaaaaaaagtttttgttggtggtaactgcatgttggtgattatga 43876521  T
Q  268 gtactgtcgaatagcggttatagcgtagcggattttgacctgacctagtcgatattgttttatgatacgctatttagtacagagtgttgtcaaatagggc 367  Q
    ||||||||||||||| |||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43876522 gtactgtcgaatagcagttatagcgtagcggattt-----tgacctagtcgatattgttttatgatacgctatttagtacagagtgttgtcaaatagggc 43876616  T
Q  368 ttctaactgttgtgtagcatagtttgaacatac 400  Q
    |||||||||||| ||||||||||||||||||||    
T  43876617 ttctaactgttgcgtagcatagtttgaacatac 43876649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 12132129 - 12132091
Alignment:
Q  320 tattgttttatgatacgctatttagtacagagtgttgtc 358  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  12132129 tattgttttatgatacgctatttagtacaaagtgttgtc 12132091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 364
Target Start/End: Original strand, 8856781 - 8856813
Alignment:
Q  332 atacgctatttagtacagagtgttgtcaaatag 364  Q
    |||||||||| ||||||||||||||||||||||    
T  8856781 atacgctattcagtacagagtgttgtcaaatag 8856813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 26373099 - 26373143
Alignment:
Q  320 tattgttttatgatacgctatttagtacagagtgttgtcaaatag 364  Q
    ||||||| | ||||||||||||||||||| |||||||||||||||    
T  26373099 tattgttctgtgatacgctatttagtacaaagtgttgtcaaatag 26373143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 14399831 - 14399874
Alignment:
Q  320 tattgttttatgatacgctatttagtacagagtgttgtcaaatag 364  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||||    
T  14399831 tattgttttgtgata-gctatttagtacaaagtgttgtcaaatag 14399874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0913 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 364
Target Start/End: Complemental strand, 1329 - 1279
Alignment:
Q  314 agtcgatattgttttatgatacgctatttagtacagagtgttgtcaaatag 364  Q
    |||||||||||||   |||||| |||||||||||| |||||||||||||||    
T  1329 agtcgatattgttccgtgatacactatttagtacaaagtgttgtcaaatag 1279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 4272 - 4322
Alignment:
Q  314 agtcgatattgttttatgatacgctatttagtacagagtgttgtcaaatag 364  Q
    |||||||||||||   |||||| |||||||||||| |||||||||||||||    
T  4272 agtcgatattgttccgtgatacactatttagtacaaagtgttgtcaaatag 4322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 364
Target Start/End: Complemental strand, 7245983 - 7245950
Alignment:
Q  331 gatacgctatttagtacagagtgttgtcaaatag 364  Q
    |||||||||||||||||| |||||||||||||||    
T  7245983 gatacgctatttagtacaaagtgttgtcaaatag 7245950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 364
Target Start/End: Complemental strand, 51616426 - 51616393
Alignment:
Q  331 gatacgctatttagtacagagtgttgtcaaatag 364  Q
    ||||||||||||| ||||||||||||||||||||    
T  51616426 gatacgctatttaatacagagtgttgtcaaatag 51616393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 364
Target Start/End: Complemental strand, 17755266 - 17755234
Alignment:
Q  332 atacgctatttagtacagagtgttgtcaaatag 364  Q
    ||||||||||||||||| |||||||||||||||    
T  17755266 atacgctatttagtacaaagtgttgtcaaatag 17755234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 28044759 - 28044715
Alignment:
Q  320 tattgttttatgatacgctatttagtacagagtgttgtcaaatag 364  Q
    ||||||||| ||||| || |||||||||| |||||||||||||||    
T  28044759 tattgttttgtgatatgcgatttagtacaaagtgttgtcaaatag 28044715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University