View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20869_low_36 (Length: 416)

Name: NF20869_low_36
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20869_low_36
NF20869_low_36
[»] chr7 (14 HSPs)
chr7 (223-263)||(46022176-46022216)
chr7 (223-280)||(7701666-7701727)
chr7 (223-263)||(35072271-35072311)
chr7 (118-172)||(24532956-24533011)
chr7 (110-172)||(32529868-32529930)
chr7 (118-172)||(46022273-46022328)
chr7 (229-263)||(3614355-3614389)
chr7 (110-152)||(9428431-9428473)
chr7 (229-263)||(35098612-35098646)
chr7 (229-280)||(40417902-40417957)
chr7 (113-172)||(12007199-12007259)
chr7 (118-172)||(29723940-29723996)
chr7 (113-172)||(30061279-30061339)
chr7 (113-172)||(47448824-47448884)
[»] chr6 (8 HSPs)
chr6 (223-280)||(16199572-16199633)
chr6 (118-172)||(17182102-17182157)
chr6 (229-280)||(14818060-14818115)
chr6 (229-280)||(26595477-26595532)
chr6 (229-263)||(30457633-30457667)
chr6 (113-146)||(10053198-10053231)
chr6 (112-172)||(11742996-11743056)
chr6 (108-172)||(12044325-12044389)
[»] chr5 (5 HSPs)
chr5 (223-280)||(17626108-17626169)
chr5 (118-172)||(17625994-17626049)
chr5 (112-172)||(11954428-11954489)
chr5 (112-172)||(19844322-19844383)
chr5 (112-172)||(19981999-19982060)
[»] chr4 (15 HSPs)
chr4 (223-280)||(34616683-34616744)
chr4 (223-280)||(38382443-38382504)
chr4 (223-280)||(47181963-47182024)
chr4 (223-263)||(48402106-48402146)
chr4 (223-263)||(56363954-56363994)
chr4 (118-172)||(34616569-34616624)
chr4 (118-172)||(38382329-38382384)
chr4 (118-172)||(56364053-56364108)
chr4 (229-263)||(19473865-19473899)
chr4 (113-170)||(46212968-46213025)
chr4 (229-263)||(49449054-49449088)
chr4 (115-172)||(34114131-34114188)
chr4 (113-172)||(39158103-39158163)
chr4 (229-286)||(39440612-39440673)
chr4 (113-172)||(51255744-51255804)
[»] chr3 (17 HSPs)
chr3 (223-280)||(21217634-21217695)
chr3 (223-263)||(23592580-23592620)
chr3 (223-263)||(23600715-23600755)
chr3 (223-280)||(44383311-44383372)
chr3 (118-172)||(21217520-21217575)
chr3 (118-172)||(23592466-23592521)
chr3 (118-172)||(42672848-42672903)
chr3 (118-172)||(44383166-44383221)
chr3 (229-263)||(13348043-13348077)
chr3 (233-263)||(25641492-25641522)
chr3 (229-263)||(37056966-37057000)
chr3 (118-171)||(51137050-51137104)
chr3 (112-172)||(27168695-27168756)
chr3 (111-172)||(29800563-29800624)
chr3 (230-263)||(42997414-42997447)
chr3 (113-172)||(288723-288783)
chr3 (118-169)||(4494253-4494305)
[»] chr2 (16 HSPs)
chr2 (223-263)||(3097770-3097810)
chr2 (223-280)||(13333058-13333119)
chr2 (223-263)||(41056656-41056696)
chr2 (223-263)||(25270491-25270531)
chr2 (118-172)||(3097869-3097924)
chr2 (118-172)||(13333178-13333233)
chr2 (118-172)||(25270588-25270643)
chr2 (121-172)||(37003617-37003668)
chr2 (110-172)||(40358125-40358188)
chr2 (118-172)||(10288153-10288207)
chr2 (118-172)||(36587482-36587536)
chr2 (110-171)||(1876302-1876363)
chr2 (112-172)||(9634449-9634510)
chr2 (113-172)||(14876955-14877015)
chr2 (112-172)||(29711976-29712036)
chr2 (227-280)||(32477458-32477515)
[»] chr1 (13 HSPs)
chr1 (223-280)||(19947632-19947693)
chr1 (229-280)||(9566848-9566903)
chr1 (112-172)||(4213069-4213130)
chr1 (229-262)||(48103273-48103306)
chr1 (111-146)||(19055434-19055469)
chr1 (118-172)||(24981575-24981630)
chr1 (118-172)||(47642620-47642675)
chr1 (110-172)||(48983681-48983744)
chr1 (229-263)||(6809708-6809742)
chr1 (114-172)||(30735307-30735365)
chr1 (229-286)||(31827079-31827140)
chr1 (223-280)||(33100930-33100991)
chr1 (223-280)||(46907317-46907378)
[»] scaffold0041 (1 HSPs)
scaffold0041 (114-172)||(34407-34465)
[»] chr8 (5 HSPs)
chr8 (118-172)||(44061720-44061775)
chr8 (229-280)||(7598836-7598891)
chr8 (229-263)||(29025388-29025422)
chr8 (224-260)||(34796505-34796541)
chr8 (112-172)||(44090884-44090944)
[»] scaffold0110 (1 HSPs)
scaffold0110 (111-172)||(28340-28402)
[»] scaffold0618 (1 HSPs)
scaffold0618 (112-172)||(8966-9026)


Alignment Details
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 46022216 - 46022176
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataaatg 263  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  46022216 tttataaaattttggttgtctcaaaagttgtcatataaatg 46022176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 7701666 - 7701727
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataaatg----ttcatataacacaactc 280  Q
    ||||| ||| |||||||||||||||||||||||||||||||    |||| ||||||||||||    
T  7701666 tttataaaactttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 7701727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 35072311 - 35072271
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataaatg 263  Q
    ||||| ||||||||||||| |||||||||||||||||||||    
T  35072311 tttataaaattttggttgtttcaaaagttgtcatataaatg 35072271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 24533011 - 24532956
Alignment:
Q  118 aaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    ||||||||||| |||||||||||| |||| | ||||||||||| ||||||||||||    
T  24533011 aaatgatatttgaacaactattttctgataatttttgtgacaattttttctctcat 24532956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 32529930 - 32529868
Alignment:
Q  110 ttaaagataaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    ||||||||||||||||||| |||||||||||||| || | |||||| |||||||| ||||||||    
T  32529930 ttaaagataaatgatatttgaacaactatttttt-ataacttttgtaacaactttctctctcat 32529868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 46022328 - 46022273
Alignment:
Q  118 aaatgatatttaaacaactattttttgattatt-ttgtgacaactttttctctcat 172  Q
    |||| |||||||||||||||||||||||| ||| || |||||| ||||||||||||    
T  46022328 aaataatatttaaacaactattttttgataattattatgacaattttttctctcat 46022273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 263
Target Start/End: Complemental strand, 3614389 - 3614355
Alignment:
Q  229 aaattttggttgtctcaaaagttgtcatataaatg 263  Q
    ||||||||||||| |||||||||||||||||||||    
T  3614389 aaattttggttgtttcaaaagttgtcatataaatg 3614355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 9428431 - 9428473
Alignment:
Q  110 ttaaagataaatgatatttaaacaactattttttgattatttt 152  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||    
T  9428431 ttaaagagaaatgatatttgaacaactattttttgataatttt 9428473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 263
Target Start/End: Complemental strand, 35098646 - 35098612
Alignment:
Q  229 aaattttggttgtctcaaaagttgtcatataaatg 263  Q
    ||||||||||||| |||||||||||||||||||||    
T  35098646 aaattttggttgtttcaaaagttgtcatataaatg 35098612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 40417902 - 40417957
Alignment:
Q  229 aaattttggttgtctcaaaagttgtcatataa----atgttcatataacacaactc 280  Q
    |||||||||||||||||||||||||| |||||    ||||||| ||||||||||||    
T  40417902 aaattttggttgtctcaaaagttgtcgtataaatagatgttcaaataacacaactc 40417957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 12007259 - 12007199
Alignment:
Q  113 aagataaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    |||| ||||||||||| |||||| |||||||||  | ||||||||||||||| ||||||||    
T  12007259 aagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcat 12007199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 29723996 - 29723940
Alignment:
Q  118 aaatgatatttaaacaactatt-ttttgatta-ttttgtgacaactttttctctcat 172  Q
    ||||||||||| |||||||||| ||||||| | ||||||||||||||| ||||||||    
T  29723996 aaatgatatttgaacaactatttttttgataatttttgtgacaactttctctctcat 29723940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 30061279 - 30061339
Alignment:
Q  113 aagataaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    |||| ||||||||||| ||||||||||||||||  | ||||||||||| ||| ||||||||    
T  30061279 aagagaaatgatattttaacaactattttttgacaatttttgtgacaattttctctctcat 30061339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 47448824 - 47448884
Alignment:
Q  113 aagataaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    |||| ||||||||||| |||||| |||||||||  | ||||||||||||||| ||||||||    
T  47448824 aagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcat 47448884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 16199572 - 16199633
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataaatg----ttcatataacacaactc 280  Q
    ||||| |||||||||||||||||||||||||||||||||||    |||| ||||||||||||    
T  16199572 tttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 16199633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 17182102 - 17182157
Alignment:
Q  118 aaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    ||||||||||| ||||||||||||||||| | ||||||||||| ||| ||||||||    
T  17182102 aaatgatattttaacaactattttttgataatttttgtgacaattttctctctcat 17182157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 14818060 - 14818115
Alignment:
Q  229 aaattttggttgtctcaaaagttgtc----atataaatgttcatataacacaactc 280  Q
    |||||||||||||| |||||||||||    ||||||||||||| ||||||||||||    
T  14818060 aaattttggttgtcacaaaagttgtcatatatataaatgttcaaataacacaactc 14818115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 26595477 - 26595532
Alignment:
Q  229 aaattttggttgtctcaaaagttgtcatataaatg----ttcatataacacaactc 280  Q
    ||||||||||||| |||||||||||||||||||||    |||| ||||||||||||    
T  26595477 aaattttggttgtttcaaaagttgtcatataaatggatgttcaaataacacaactc 26595532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 30457633 - 30457667
Alignment:
Q  229 aaattttggttgtctcaaaagttgtcatataaatg 263  Q
    ||||||||||| |||||||||||||||||||||||    
T  30457633 aaattttggttatctcaaaagttgtcatataaatg 30457667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 10053231 - 10053198
Alignment:
Q  113 aagataaatgatatttaaacaactattttttgat 146  Q
    |||| |||||||||||||||||||||||||||||    
T  10053231 aagagaaatgatatttaaacaactattttttgat 10053198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 11743056 - 11742996
Alignment:
Q  112 aaagataaatgatatttaaacaactattttttgattattttgtgacaactttttctctcat 172  Q
    ||||| |||| ||||||  |||||||||||||||| |||||  ||||| ||||||||||||    
T  11743056 aaagagaaataatatttgtacaactattttttgataatttttagacaattttttctctcat 11742996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 12044325 - 12044389
Alignment:
Q  108 ttttaaagataaatgatatttaaacaactattttttgattattttgtgacaactttttctctcat 172  Q
    |||| |||| |||||||||||| |||||||||||||||  | |||  ||||||||| ||||||||    
T  12044325 tttttaagagaaatgatatttatacaactattttttgacaacttttagacaactttctctctcat 12044389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 17626108 - 17626169
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataaatg----ttcatataacacaactc 280  Q
    ||||| |||||||||||||||||||||||||||||||||||    |||| ||||||||||||    
T  17626108 tttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 17626169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 17625994 - 17626049
Alignment:
Q  118 aaatgatatttaaacaactattttttgattatt-ttgtgacaactttttctctcat 172  Q
    |||| |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||    
T  17625994 aaataatatttaaacaactattttttgataattattgtgacaattttctctctcat 17626049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 11954428 - 11954489
Alignment:
Q  112 aaagataaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    ||||| ||||||||||| |||||||||| ||| || | ||||||||||||||| ||||||||    
T  11954428 aaagagaaatgatatttgaacaactattgttttataatttttgtgacaactttctctctcat 11954489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 19844383 - 19844322
Alignment:
Q  112 aaagataaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    ||||| |||||||||||  |||||||||||||||| | |||||||| |||||| ||||||||    
T  19844383 aaagagaaatgatatttgtacaactattttttgataacttttgtgataactttctctctcat 19844322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 19982060 - 19981999
Alignment:
Q  112 aaagataaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    ||||| ||||||||||| |||||  |||||||||| | ||||||||||| ||||||||||||    
T  19982060 aaagagaaatgatattttaacaatcattttttgataatttttgtgacaattttttctctcat 19981999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 34616683 - 34616744
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataa----atgttcatataacacaactc 280  Q
    ||||| ||||||||||||||||||||||||||||||||    ||||||| ||||||||||||    
T  34616683 tttataaaattttggttgtctcaaaagttgtcatataaatagatgttcaaataacacaactc 34616744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 38382443 - 38382504
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataaatg----ttcatataacacaactc 280  Q
    ||||| |||||||||||||||||||||||||||||||||||    |||| ||||||||||||    
T  38382443 tttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 38382504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 47181963 - 47182024
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataaatg----ttcatataacacaactc 280  Q
    ||||| |||||||||||||||||||||||||||||||||||    |||| ||||||||||||    
T  47181963 tttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 47182024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 48402146 - 48402106
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataaatg 263  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  48402146 tttataaaattttggttgtctcaaaagttgtcatataaatg 48402106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 56363994 - 56363954
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataaatg 263  Q
    ||||| |||||||||||||||||||||||||||| ||||||    
T  56363994 tttataaaattttggttgtctcaaaagttgtcatgtaaatg 56363954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 34616569 - 34616624
Alignment:
Q  118 aaatgatatttaaacaactattttttgattatt-ttgtgacaactttttctctcat 172  Q
    |||| |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||    
T  34616569 aaataatatttaaacaactattttttgataattattgtgacaattttctctctcat 34616624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 38382329 - 38382384
Alignment:
Q  118 aaatgatatttaaacaactattttttgattatt-ttgtgacaactttttctctcat 172  Q
    |||| |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||    
T  38382329 aaataatatttaaacaactattttttgataattattgtgacaattttctctctcat 38382384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 56364108 - 56364053
Alignment:
Q  118 aaatgatatttaaacaactattttttgattatt-ttgtgacaactttttctctcat 172  Q
    |||| |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||    
T  56364108 aaataatatttaaacaactattttttgataattattgtgacaattttctctctcat 56364053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 263
Target Start/End: Complemental strand, 19473899 - 19473865
Alignment:
Q  229 aaattttggttgtctcaaaagttgtcatataaatg 263  Q
    |||||||| ||||||||||||||||||||||||||    
T  19473899 aaattttgattgtctcaaaagttgtcatataaatg 19473865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 46212968 - 46213025
Alignment:
Q  113 aagataaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctc 170  Q
    |||| ||||||||||| |||||||||||||| || | ||||||||||||||||||||||    
T  46212968 aagagaaatgatatttgaacaactatttttt-ataatttttgtgacaactttttctctc 46213025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 263
Target Start/End: Complemental strand, 49449088 - 49449054
Alignment:
Q  229 aaattttggttgtctcaaaagttgtcatataaatg 263  Q
    ||||||||||||||| |||||||||||||||||||    
T  49449088 aaattttggttgtcttaaaagttgtcatataaatg 49449054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 34114188 - 34114131
Alignment:
Q  115 gataaatgatatttaaacaactattttttgattattttgtgacaactttttctctcat 172  Q
    ||||||||||||||  ||||||||||| | || | ||| |||||||||||||||||||    
T  34114188 gataaatgatatttgtacaactattttattataactttttgacaactttttctctcat 34114131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 39158103 - 39158163
Alignment:
Q  113 aagataaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    |||| ||||||||||| |||||  |||||||||| | ||||||||||||||| ||||||||    
T  39158103 aagagaaatgatatttgaacaatcattttttgataatttttgtgacaactttctctctcat 39158163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 39440612 - 39440673
Alignment:
Q  229 aaattttggttgtctcaaaagttgtcatata----aatgttcatataacacaactcgatttt 286  Q
    |||||||| ||||| |||||||||||| |||    |||||||| ||||||||||||||||||    
T  39440612 aaattttgattgtcacaaaagttgtcacatatatgaatgttcaaataacacaactcgatttt 39440673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 51255744 - 51255804
Alignment:
Q  113 aagataaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    |||| ||||||||||| |||||| |||||||||  | ||||||||||||||| ||||||||    
T  51255744 aagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcat 51255804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 21217634 - 21217695
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataaatg----ttcatataacacaactc 280  Q
    ||||| |||||||||||||||||||||||||||||||||||    |||| ||||||||||||    
T  21217634 tttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 21217695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 23592580 - 23592620
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataaatg 263  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  23592580 tttataaaattttggttgtctcaaaagttgtcatataaatg 23592620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 23600715 - 23600755
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataaatg 263  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  23600715 tttataaaattttggttgtctcaaaagttgtcatataaatg 23600755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 44383311 - 44383372
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataaatg----ttcatataacacaactc 280  Q
    ||||| |||||||| ||||||||||||||||||||||||||    |||| ||||||||||||    
T  44383311 tttataaaattttgattgtctcaaaagttgtcatataaatggatgttcaaataacacaactc 44383372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 21217520 - 21217575
Alignment:
Q  118 aaatgatatttaaacaactattttttgattatt-ttgtgacaactttttctctcat 172  Q
    |||| |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||    
T  21217520 aaataatatttaaacaactattttttgataattattgtgacaattttctctctcat 21217575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 23592466 - 23592521
Alignment:
Q  118 aaatgatatttaaacaactattttttgattatt-ttgtgacaactttttctctcat 172  Q
    |||| |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||    
T  23592466 aaataatatttaaacaactattttttgataattattgtgacaattttctctctcat 23592521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 42672903 - 42672848
Alignment:
Q  118 aaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    |||||||||||  |||||||||||||||| | ||||||||||| ||||||||||||    
T  42672903 aaatgatatttgcacaactattttttgataatttttgtgacaaatttttctctcat 42672848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 44383166 - 44383221
Alignment:
Q  118 aaatgatatttaaacaactattttttgattatt-ttgtgacaactttttctctcat 172  Q
    |||| |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||    
T  44383166 aaataatatttaaacaactattttttgataattattgtgacaattttctctctcat 44383221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 263
Target Start/End: Complemental strand, 13348077 - 13348043
Alignment:
Q  229 aaattttggttgtctcaaaagttgtcatataaatg 263  Q
    |||||||||||||| ||||||||||||||||||||    
T  13348077 aaattttggttgtcccaaaagttgtcatataaatg 13348043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 25641522 - 25641492
Alignment:
Q  233 tttggttgtctcaaaagttgtcatataaatg 263  Q
    |||||||||||||||||||||||||||||||    
T  25641522 tttggttgtctcaaaagttgtcatataaatg 25641492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 263
Target Start/End: Complemental strand, 37057000 - 37056966
Alignment:
Q  229 aaattttggttgtctcaaaagttgtcatataaatg 263  Q
    |||| ||||||||||||||||||||||||||||||    
T  37057000 aaatattggttgtctcaaaagttgtcatataaatg 37056966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 51137104 - 51137050
Alignment:
Q  118 aaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctca 171  Q
    |||||||||||  ||||||||||||| || | |||||||||||||||||||||||    
T  51137104 aaatgatatttgtacaactattttttaataacttttgtgacaactttttctctca 51137050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 27168756 - 27168695
Alignment:
Q  112 aaagataaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    ||||| ||||||||||| |||||| ||||||| || | ||||||||||||||| ||||||||    
T  27168756 aaagagaaatgatatttgaacaaccattttttaataatttttgtgacaactttctctctcat 27168695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 29800624 - 29800563
Alignment:
Q  111 taaagataaatgatatttaaacaactattttttgattattttgtgacaactttttctctcat 172  Q
    |||||| |||||||||||  ||||||| ||| |||| |||||  ||||||||||||||||||    
T  29800624 taaagagaaatgatatttgtacaactactttgtgataatttttagacaactttttctctcat 29800563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 42997414 - 42997447
Alignment:
Q  230 aattttggttgtctcaaaagttgtcatataaatg 263  Q
    |||||||||||||| |||||||||||||||||||    
T  42997414 aattttggttgtcttaaaagttgtcatataaatg 42997447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 288723 - 288783
Alignment:
Q  113 aagataaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    |||| ||||||||||| |||||| ||||||| || | ||||||||||||||| ||||||||    
T  288723 aagagaaatgatatttgaacaacaatttttttataacttttgtgacaactttctctctcat 288783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 4494305 - 4494253
Alignment:
Q  118 aaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctct 169  Q
    ||||||||||| || |||||||||||||| | ||||||||||||||| |||||    
T  4494305 aaatgatatttgaataactattttttgataatttttgtgacaactttctctct 4494253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 3097810 - 3097770
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataaatg 263  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  3097810 tttataaaattttggttgtctcaaaagttgtcatataaatg 3097770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 13333119 - 13333058
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataa----atgttcatataacacaactc 280  Q
    ||||| ||||||||||||||||||||||||||||||||    ||||||| ||||||||||||    
T  13333119 tttataaaattttggttgtctcaaaagttgtcatataaatcgatgttcaaataacacaactc 13333058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 41056696 - 41056656
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataaatg 263  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  41056696 tttataaaattttggttgtctcaaaagttgtcatataaatg 41056656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 25270531 - 25270491
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataaatg 263  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  25270531 tttataaaattttggttgtctcgaaagttgtcatataaatg 25270491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 3097924 - 3097869
Alignment:
Q  118 aaatgatatttaaacaactattttttgattatt-ttgtgacaactttttctctcat 172  Q
    |||| |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||    
T  3097924 aaataatatttaaacaactattttttgataattattgtgacaattttctctctcat 3097869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 13333233 - 13333178
Alignment:
Q  118 aaatgatatttaaacaactattttttgattatt-ttgtgacaactttttctctcat 172  Q
    |||| |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||    
T  13333233 aaataatatttaaacaactattttttgataattattgtgacaattttctctctcat 13333178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 25270643 - 25270588
Alignment:
Q  118 aaatgatatttaaacaactattttttgattatt-ttgtgacaactttttctctcat 172  Q
    |||| |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||    
T  25270643 aaataatatttaaacaactattttttgataattattgtgacaattttctctctcat 25270588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 37003617 - 37003668
Alignment:
Q  121 tgatatttaaacaactattttttgattattttgtgacaactttttctctcat 172  Q
    |||||||| |||||||||||||| ||  ||||||||||||||| ||||||||    
T  37003617 tgatatttgaacaactattttttaatatttttgtgacaactttctctctcat 37003668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 40358188 - 40358125
Alignment:
Q  110 ttaaagataaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    ||||||| |||||||||||  ||||||||||||| || | ||||||||||| ||||||||||||    
T  40358188 ttaaagagaaatgatatttctacaactattttttaataatttttgtgacaattttttctctcat 40358125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 10288153 - 10288207
Alignment:
Q  118 aaatgatatttaaacaactattttttgattattttgtgacaactttttctctcat 172  Q
    |||||||||||  ||||||||||| |||| |||||  ||||||||||||||||||    
T  10288153 aaatgatatttgtacaactattttgtgataatttttagacaactttttctctcat 10288207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 36587536 - 36587482
Alignment:
Q  118 aaatgatatttaaacaactattttttgattattttgtgacaactttttctctcat 172  Q
    ||||||||||| |||||| |||||||||  ||||| |||||||||| ||||||||    
T  36587536 aaatgatatttgaacaaccattttttgacaattttttgacaactttctctctcat 36587482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 1876363 - 1876302
Alignment:
Q  110 ttaaagataaatgatatttaaacaactattttttgattattttgtgacaactttttctctca 171  Q
    ||||||| |||||||||||| ||||||||||||| |  ||||| | |||||||| |||||||    
T  1876363 ttaaagagaaatgatatttatacaactattttttcacaatttttttacaactttctctctca 1876302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 9634510 - 9634449
Alignment:
Q  112 aaagataaatgatatttaaacaactattttttgattatttt-gtgacaactttttctctcat 172  Q
    ||||| ||||||||||| |||| | ||||| |||| ||||| ||||||||||||||||||||    
T  9634510 aaagagaaatgatatttgaacatccattttatgataatttttgtgacaactttttctctcat 9634449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 14876955 - 14877015
Alignment:
Q  113 aagataaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    |||| ||||||||| | ||||||||||||||||  | ||||||||||||||| ||||||||    
T  14876955 aagagaaatgatatgtgaacaactattttttgacaacttttgtgacaactttctctctcat 14877015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 29711976 - 29712036
Alignment:
Q  112 aaagataaatgatatttaaacaactattttttgattattttgtgacaactttttctctcat 172  Q
    ||||| ||||||||||| |||| | ||||| |||  ||||||||||||| |||||||||||    
T  29711976 aaagagaaatgatatttgaacatccattttgtgacaattttgtgacaaccttttctctcat 29712036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 280
Target Start/End: Original strand, 32477458 - 32477515
Alignment:
Q  227 tcaaattttggttgtctcaaaagttgtc----atataaatgttcatataacacaactc 280  Q
    |||||||||||||||| |||||||||||    |||| |||||||| ||||||||||||    
T  32477458 tcaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactc 32477515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 19947693 - 19947632
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatat----aaatgttcatataacacaactc 280  Q
    ||||| ||||||||||||||||||||||||||||||    ||||||||| ||||||||||||    
T  19947693 tttataaaattttggttgtctcaaaagttgtcatataaataaatgttcaaataacacaactc 19947632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 280
Target Start/End: Complemental strand, 9566903 - 9566848
Alignment:
Q  229 aaattttggttgtctcaaaagttgtcatata----aatgttcatataacacaactc 280  Q
    |||||||||||||||||||||||||||||||    |||||||| ||||||||||||    
T  9566903 aaattttggttgtctcaaaagttgtcatataattgaatgttcaaataacacaactc 9566848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 4213069 - 4213130
Alignment:
Q  112 aaagataaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    ||||| ||||||||||| |||||| |||||||||| | ||||||||||||||| ||||||||    
T  4213069 aaagagaaatgatatttgaacaaccattttttgataacttttgtgacaactttctctctcat 4213130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 262
Target Start/End: Complemental strand, 48103306 - 48103273
Alignment:
Q  229 aaattttggttgtctcaaaagttgtcatataaat 262  Q
    ||||||||||||||||||||||||||||||||||    
T  48103306 aaattttggttgtctcaaaagttgtcatataaat 48103273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 19055434 - 19055469
Alignment:
Q  111 taaagataaatgatatttaaacaactattttttgat 146  Q
    |||||| |||||||||||||||||||||||||||||    
T  19055434 taaagagaaatgatatttaaacaactattttttgat 19055469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 24981630 - 24981575
Alignment:
Q  118 aaatgatatttaaacaactattttttgattatt-ttgtgacaactttttctctcat 172  Q
    |||| |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||    
T  24981630 aaataatatttaaacaactattttttgataattattgtgacaattttctctctcat 24981575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 47642675 - 47642620
Alignment:
Q  118 aaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    ||||||||||| |||||| |||||||||| | ||||||||||||||| ||||||||    
T  47642675 aaatgatatttgaacaaccattttttgataacttttgtgacaactttctctctcat 47642620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 48983744 - 48983681
Alignment:
Q  110 ttaaagataaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    ||||||| ||||||||||| |||||| |||||||||  | ||||||||||||||| ||||||||    
T  48983744 ttaaagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcat 48983681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 6809708 - 6809742
Alignment:
Q  229 aaattttggttgtctcaaaagttgtcatataaatg 263  Q
    |||||||||||||| ||||||||||||||||||||    
T  6809708 aaattttggttgtcccaaaagttgtcatataaatg 6809742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 30735365 - 30735307
Alignment:
Q  114 agataaatgatatttaaacaactattttttgattattttgtgacaactttttctctcat 172  Q
    ||||||||||||||| |||||| |||||||     ||||||||||||||||||||||||    
T  30735365 agataaatgatatttgaacaaccattttttacaacttttgtgacaactttttctctcat 30735307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 31827079 - 31827140
Alignment:
Q  229 aaattttggttgtctcaaaagttgtcat----ataaatgttcatataacacaactcgatttt 286  Q
    ||||||||||||| ||||||||||||||    ||| ||||||| |||||||||||| |||||    
T  31827079 aaattttggttgtatcaaaagttgtcatctaaatagatgttcaaataacacaactctatttt 31827140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 33100930 - 33100991
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtc----atataaatgttcatataacacaactc 280  Q
    ||||| |||||||||||||| |||||||||||    |||| |||||||| ||||||||||||    
T  33100930 tttataaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactc 33100991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 46907317 - 46907378
Alignment:
Q  223 tttatcaaattttggttgtctcaaaagttgtcatataaatg----ttcatataacacaactc 280  Q
    ||||| |||||||| ||||||||||||||||| ||||||||    |||| ||||||||||||    
T  46907317 tttataaaattttgattgtctcaaaagttgtcgtataaatggatgttcaaataacacaactc 46907378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 34407 - 34465
Alignment:
Q  114 agataaatgatatttaaacaactattttttgattattttgtgacaactttttctctcat 172  Q
    |||||||||||||||  |||||||||||||||  | |||||||||||||| ||||||||    
T  34407 agataaatgatatttgtacaactattttttgacaactttgtgacaactttctctctcat 34465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 44061720 - 44061775
Alignment:
Q  118 aaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    ||||||||||| |||||| |||||||||| | ||||||||||||||| ||||||||    
T  44061720 aaatgatatttgaacaaccattttttgataacttttgtgacaactttctctctcat 44061775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 7598836 - 7598891
Alignment:
Q  229 aaattttggttgtctcaaaagttgtcatata----aatgttcatataacacaactc 280  Q
    ||||||||||||||||||||||| |||||||    |||||||| ||||||||||||    
T  7598836 aaattttggttgtctcaaaagttttcatataattgaatgttcaaataacacaactc 7598891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 29025388 - 29025422
Alignment:
Q  229 aaattttggttgtctcaaaagttgtcatataaatg 263  Q
    |||||||||||||| ||||||||||||||||||||    
T  29025388 aaattttggttgtcccaaaagttgtcatataaatg 29025422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 34796505 - 34796541
Alignment:
Q  224 ttatcaaattttggttgtctcaaaagttgtcatataa 260  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  34796505 ttataaaattttggttgtcttaaaagttgtcatataa 34796541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 44090884 - 44090944
Alignment:
Q  112 aaagataaatgatatttaaacaactattttttgattattttgtgacaactttttctctcat 172  Q
    ||||| ||||||||||| |||||||| |||| ||| | |||||||||| ||| ||||||||    
T  44090884 aaagagaaatgatatttgaacaactacttttcgataactttgtgacaattttctctctcat 44090944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 28402 - 28340
Alignment:
Q  111 taaagataaatgatatttaaacaactattttttgatta-ttttgtgacaactttttctctcat 172  Q
    |||||| ||||||||||| |||||| | |||||||| | ||||||||||||||| ||||||||    
T  28402 taaagagaaatgatatttgaacaaccactttttgataacttttgtgacaactttctctctcat 28340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 9026 - 8966
Alignment:
Q  112 aaagataaatgatatttaaacaactattttttgattattttgtgacaactttttctctcat 172  Q
    ||||| ||||||||||| |||||||| |||| ||| | |||||||||| ||| ||||||||    
T  9026 aaagagaaatgatatttgaacaactacttttcgataactttgtgacaattttctctctcat 8966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University