View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20869_low_38 (Length: 408)
Name: NF20869_low_38
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_38 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 30 - 390
Target Start/End: Complemental strand, 6658980 - 6658620
Alignment:
| Q |
30 |
tttgcagcaaacaagtaggtaaaagcaaggcttgtgagtatgataggcatgcctattgataaaagccatattgaaaatttattgttgataggaactccac |
129 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
6658980 |
tttgcagcaaacaagtaggtaagagcaaggcttgtgattacgatagacatgcctattgataaaagccacattgaaaatttattgttgataggaattccac |
6658881 |
T |
|
| Q |
130 |
taacaagcaagagaagaacactaagtgatgcaatgaaacaagttgtattgcatatcaaaaattttaaatagtagtcatgataatcagtagctaagatagc |
229 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||| |
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|
| T |
6658880 |
taacaagcaagagaataacactaagtgatgcaatgaaacaaattgtattgcatatcaaaaatcttaaatattcatcatgataataagtagctaagatagc |
6658781 |
T |
|
| Q |
230 |
ttctccgacgcatattgtgggatctattgtggaacaagaggttccatcattaagactagcttgcacaacgccaccaggtggattagtggcaagtgaaaat |
329 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| ||| ||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6658780 |
ttctcctgcgcatattgtgggatatattgtggaacaacgggtcttatcatcaacactaacttgcacaacgccaccaggtggattagtggcaagtgaaaat |
6658681 |
T |
|
| Q |
330 |
gtcatagttgcgattatggaaactgttaaacttatgctacttttcatatcttttaaccatt |
390 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |
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|
| T |
6658680 |
gtcatagttgcgattatggaagctgttaaacttatgctacctttcatatgctttaaccatt |
6658620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 30 - 390
Target Start/End: Complemental strand, 6739382 - 6739022
Alignment:
| Q |
30 |
tttgcagcaaacaagtaggtaaaagcaaggcttgtgagtatgataggcatgcctattgataaaagccatattgaaaatttattgttgataggaactccac |
129 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
6739382 |
tttgcagcaaacaagtaggtaagagcaaggcttgtgattacgatagacatgcctattgataaaagccacattgaaaatttattgttgataggaattccac |
6739283 |
T |
|
| Q |
130 |
taacaagcaagagaagaacactaagtgatgcaatgaaacaagttgtattgcatatcaaaaattttaaatagtagtcatgataatcagtagctaagatagc |
229 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||| |
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|
| T |
6739282 |
taacaagcaagagaataacactaagtgatgcaatgaaacaaattgtattgcatatcaaaaatcttaaatattcatcatgataataagtagctaagatagc |
6739183 |
T |
|
| Q |
230 |
ttctccgacgcatattgtgggatctattgtggaacaagaggttccatcattaagactagcttgcacaacgccaccaggtggattagtggcaagtgaaaat |
329 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| ||| ||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6739182 |
ttctcctgcgcatattgtgggatatattgtggaacaacgggtcttatcatcaacactaacttgcacaacgccaccaggtggattagtggcaagtgaaaat |
6739083 |
T |
|
| Q |
330 |
gtcatagttgcgattatggaaactgttaaacttatgctacttttcatatcttttaaccatt |
390 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |
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|
| T |
6739082 |
gtcatagttgcgattatggaagctgttaaacttatgctacctttcatatgctttaaccatt |
6739022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 6750033 - 6749661
Alignment:
| Q |
18 |
ggagtgaccaagtttgcagcaaacaagtaggtaaaagcaaggcttgtgagtatgataggcatgcctattgataaaagccatattgaaaatttattgttga |
117 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
6750033 |
ggagtgaccatgtttgcagcatacaagtaggtaagagcaaggcttgtgattacgatagacatgcctattgataaaagccacattgaaaatttattgttga |
6749934 |
T |
|
| Q |
118 |
taggaactccactaacaagcaagagaagaacactaagtgatgcaatgaaacaagttgtattgcatatcaaaaattttaaatagtagtcatgataatcagt |
217 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |||||||||| ||| |
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|
| T |
6749933 |
taggaattccactaacaagcaagagaataacactaagtgatgcaatgaaacaaattgtattgcatatcaaaaatcttaaatattcatcatgataataagt |
6749834 |
T |
|
| Q |
218 |
agctaagatagcttctccgacgcatattgtgggatctattgtggaacaagaggttccatcattaagactagcttgcacaacgccaccaggtggattagtg |
317 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||| | | |||| || |||| ||||||||||||||||||||||||||||| |
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|
| T |
6749833 |
agctaagatagcttctcctgcgcatattgtgggatatattgtggaacaaaggataatatcaacaacactaacttgcacaacgccaccaggtggattagtg |
6749734 |
T |
|
| Q |
318 |
gcaagtgaaaatgtcatagttgcgattatggaaactgttaaacttatgctacttttcatatcttttaaccatt |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |
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| T |
6749733 |
gcaagtgaaaatgtcatagttgcgattatggaagctgttaaacttatgctacctttcatatgctttaaccatt |
6749661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 6756824 - 6756452
Alignment:
| Q |
18 |
ggagtgaccaagtttgcagcaaacaagtaggtaaaagcaaggcttgtgagtatgataggcatgcctattgataaaagccatattgaaaatttattgttga |
117 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
6756824 |
ggagtgaccatgtttgcagcatacaagtaggtaagagcaaggcttgtgattacgatagacatgcctattgataaaagccacattgaaaatttattgttga |
6756725 |
T |
|
| Q |
118 |
taggaactccactaacaagcaagagaagaacactaagtgatgcaatgaaacaagttgtattgcatatcaaaaattttaaatagtagtcatgataatcagt |
217 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | ||||||| || ||| |
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|
| T |
6756724 |
taggaattccactaacaagcaagagaataacactaagtgatgcaatgaaacaaattgtattgcatatcaaaaatcttaaatattcatcatgatgataagt |
6756625 |
T |
|
| Q |
218 |
agctaagatagcttctccgacgcatattgtgggatctattgtggaacaagaggttccatcattaagactagcttgcacaacgccaccaggtggattagtg |
317 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||| | | | |||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
6756624 |
agctaagatagcttctcctgcgcatattgtgggatttattgtggaacattggttgctatcaccaacactagcttgcacaacgccaccaggtggattagtg |
6756525 |
T |
|
| Q |
318 |
gcaagtgaaaatgtcatagttgcgattatggaaactgttaaacttatgctacttttcatatcttttaaccatt |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
6756524 |
gcaagtgaaaatgtcatagttgcgattatggaagctgttaaacttatgctacctttcatatgctttaaccatt |
6756452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 32 - 408
Target Start/End: Complemental strand, 6615495 - 6615101
Alignment:
| Q |
32 |
tgcagcaaacaagtaggtaaaagcaaggcttgtgagtatgataggcatgcctattgataaaagccatattgaaaatttattgttgataggaactccacta |
131 |
Q |
| |
|
|||||||||||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
6615495 |
tgcagcaaacaagtaggtaagagcaaggcctgagagtatgatggacatgactattgataaaagccatattaaaaatttattgttgataggaattccacta |
6615396 |
T |
|
| Q |
132 |
acaagcaagagaagaacactaagtgatgcaatgaaacaagttgtattgcatatcaaaaattttaaatagtagtcatgataatc-agtagctaagatagct |
230 |
Q |
| |
|
||||||| | || ||||||||||||||||||||||||| |||||||||||||||||| || ||||| || | ||||| ||| || ||||||||| |
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|
| T |
6615395 |
acaagcacaaaaataacactaagtgatgcaatgaaacaaaatgtattgcatatcaaaaaagctagatagtcatcct-ttaatctagttgccaagatagct |
6615297 |
T |
|
| Q |
231 |
tctccgacgcatattgtgggat------------------ctattgtggaacaagaggttccatcattaagactagcttgcacaacgccaccaggtggat |
312 |
Q |
| |
|
||||| | ||||||||||| || ||||||||||||| || | | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6615296 |
tctcctaagcatattgtggtatttaccattctggtatttaatattgtggaacaatagttgctatcatcaagactagcttgcacaacgccaccaggtggat |
6615197 |
T |
|
| Q |
313 |
tagtggcaagtgaaaatgtcatagttgcgattatggaaactgttaaacttatgctacttttcatatcttttaaccattctatatctttagaaggat |
408 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | |||| |||||||||||||||||| ||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
6615196 |
tagtggcaagtgaaaatgtcagagttgcgatcagggaagctgttaaacttatgctacctttcatatcgtctaaccatttattatctttagaaggat |
6615101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 19059192 - 19059597
Alignment:
| Q |
18 |
ggagtgaccaagtttgcagcaaacaagtaggtaaaagcaaggcttgtgagtatgataggcatgcctattgataaaagccatattgaaaatttattgttga |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||| |||||||| ||||||| || |
|
|
| T |
19059192 |
ggagtgaccatgtttgcagcaaacaagtaggtaagagcaaggcttgagagtatgatagacatgcccattgataaaagccacattgaaaacttattgtcga |
19059291 |
T |
|
| Q |
118 |
taggaactccactaacaagcaagagaagaacactaagtgatgcaatgaaacaagttgtattgcatatcaaaaattttaaatagtagtcatgataatcagt |
217 |
Q |
| |
|
|||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| || ||| | |||||| | ||| |
|
|
| T |
19059292 |
taggaattccactaacaagcacaagaataacactaagtgatgcaatgaaacaaattgtattgcatatcaaaaaagctagatacttatcatgagatctagt |
19059391 |
T |
|
| Q |
218 |
agctaagatagcttctccgacgcatattgtgggatctattgtgga---------------acaagaggttccatcattaagactagcttgcacaacgcca |
302 |
Q |
| |
|
|| |||||||||||||| ||||||||||||| || ||||||||| ||| | | | |||| || ||||||||||||||||||| |
|
|
| T |
19059392 |
tgccaagatagcttctcctacgcatattgtggtatttattgtggatattaatattttgccacattcgttgctatcaccaacactagcttgcacaacgcca |
19059491 |
T |
|
| Q |
303 |
ccaggtggattagtggcaagtgaaaatgtcatagttgcgattatggaaactgttaaacttatgctacttttcatatcttttaaccattctatatctttag |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19059492 |
ccaggtggattagtggcaagtgaaaatgtcagagttgcgattagggaagctgttaaacttatgctacttttcatatcttttaaccattctatatctttag |
19059591 |
T |
|
| Q |
403 |
aaggat |
408 |
Q |
| |
|
|||||| |
|
|
| T |
19059592 |
aaggat |
19059597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 32 - 408
Target Start/End: Complemental strand, 4781 - 4387
Alignment:
| Q |
32 |
tgcagcaaacaagtaggtaaaagcaaggcttgtgagtatgataggcatgcctattgataaaagccatattgaaaatttattgttgataggaactccacta |
131 |
Q |
| |
|
|||||||||||||||||||| |||||||| || ||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
4781 |
tgcagcaaacaagtaggtaagagcaaggcctgagagtatgatggacatgactattgataaaagccatattaaaaatttattgttgataggaattccacta |
4682 |
T |
|
| Q |
132 |
acaagcaagagaagaacactaagtgatgcaatgaaacaagttgtattgcatatcaaaaattttaaatagtagtcatgataatc-agtagctaagatagct |
230 |
Q |
| |
|
||||||| | || ||||||||||||||||||||||||| |||||||||||||||||| || ||||| || | ||||| ||| || ||||||||| |
|
|
| T |
4681 |
acaagcacaaaaataacactaagtgatgcaatgaaacaaaatgtattgcatatcaaaaaagctagatagtcatcct-ttaatctagttgccaagatagct |
4583 |
T |
|
| Q |
231 |
tctccgacgcatattgtgggat------------------ctattgtggaacaagaggttccatcattaagactagcttgcacaacgccaccaggtggat |
312 |
Q |
| |
|
||||| | ||||||||||| || ||||||||||||| || | | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4582 |
tctcctaagcatattgtggtatttaccattctggtatttaatattgtggaacaatagttgctatcatcaagactagcttgcacaacgccaccaggtggat |
4483 |
T |
|
| Q |
313 |
tagtggcaagtgaaaatgtcatagttgcgattatggaaactgttaaacttatgctacttttcatatcttttaaccattctatatctttagaaggat |
408 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | |||| |||||||||||||||||| ||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
4482 |
tagtggcaagtgaaaatgtcagagttgcgatcagggaagctgttaaacttatgctacctttcatatcgtctaaccatttattatctttagaaggat |
4387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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