View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_4 (Length: 830)
Name: NF20869_low_4
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 662; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 18 - 817
Target Start/End: Original strand, 28280098 - 28280911
Alignment:
| Q |
18 |
gttaaaagtaaaggtcttataaatttaataactattcctttaaaaaataataataattatgtatgcttcaaattacactataatattctatcataaacta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28280098 |
gttaaaagtaaaggtcttataaatttaataactattcctttaaaaaataataataattatgtatgcttcaaattacactataatattctatcataaacta |
28280197 |
T |
|
| Q |
118 |
tatttctagatcttcatctattttaatgatccgactatcctccattttatctannnnnnnnactacatgatctaagccttttgtttacataaccaaacca |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
28280198 |
tatttctagatcttcatctattttaatgatccgactatcctccattttatctattttttttactacatgatctaagtcttttgtttacataaccaaacca |
28280297 |
T |
|
| Q |
218 |
ctaaagtctaatttgtactatcttttctactaataacccaactttctctaatgttgacatttctaattttgttttccttactacatgtgttggttctttg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28280298 |
ctaaagtctaatttgtactatcttttctactaataatccaactttctctaatgttgacatttctaattttgttttccttactacatgtgttggttctttg |
28280397 |
T |
|
| Q |
318 |
tccatacaacatccttggtcttacaattgtcggataaatattttgctttaacttgaacagtactcttatatcagataaaatcctcaatgttctcctccat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28280398 |
tccatacaacatccttggtcttacaattgtcggataaatattttgctttaacttgaacagtactcttatatcagataaaatcctcgatgttctcctccat |
28280497 |
T |
|
| Q |
418 |
atcaaccatccaacttgataatttaaatttcgttagacaaaatttcagtaataccatttttgcactaaaattaatttgattcatcatatcaaaggaaaca |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||| |
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|
| T |
28280498 |
atcaaccatccaacttgataatttaaatttcgttagacaaaatttcagtaataccgtttttgcactaaatttaatttgattcatc--atcaaaggaaaca |
28280595 |
T |
|
| Q |
518 |
tgctctcattcattttctaacnnnnnnnnntaatcacaatactttaagtaatttaatcacacagctgtcaactgtcaagtaactaagtttgacagctgtc |
617 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
28280596 |
tgctctcattcattttctaac-taaaaaaataatcacaatactataagtaatttaatcacacagctgtcaactgtcaagtaactaactttgacagctgtc |
28280694 |
T |
|
| Q |
618 |
acaaaacctctaacagaaacggttatgagtaagttactactca-----------------gctttacatacattcccgctacacatacattctcactcac |
700 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28280695 |
acaaaacctctaacagaaacggttatgagtaagttactactcacttatttatatatagatgctttacatacattcccgctacacatacattctcactcac |
28280794 |
T |
|
| Q |
701 |
catttcaaatcaagctttattttgtgaataacagtaaagaaaatggcttcttcatcttccaaacctgatcatgcttccaaggacatgaaaaccgatggct |
800 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28280795 |
catttcaaatcaagctttgttttgtgaataacagtaaagaaaatggcttcttcatcttccaaacctgatcatgcttccaaggacatgaaaaccgatggct |
28280894 |
T |
|
| Q |
801 |
cctccaccctctctgct |
817 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
28280895 |
cctccaccctctctgct |
28280911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 7634606 - 7634569
Alignment:
| Q |
85 |
tcaaattacactataatattctatcataaactatattt |
122 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
7634606 |
tcaaattacgctataatgttctatcataaactatattt |
7634569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 35672919 - 35672882
Alignment:
| Q |
85 |
tcaaattacactataatattctatcataaactatattt |
122 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
35672919 |
tcaaattacaccataacattctatcataaactatattt |
35672882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 52981455 - 52981492
Alignment:
| Q |
85 |
tcaaattacactataatattctatcataaactatattt |
122 |
Q |
| |
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||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
52981455 |
tcaaattacaccataatattctatcataaaccatattt |
52981492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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