View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_45 (Length: 378)
Name: NF20869_low_45
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_45 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 19639 - 20016
Alignment:
| Q |
1 |
ccattataccaagatgctagattcatcgagagtgttcactgaaatcgtgtctcatataaaagggggtatgcaatctctggatcgtggtgaagggaagtta |
100 |
Q |
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| T |
19639 |
ccattataccaagatgctagattcatcgagagtgttcactgaaatcgtgtctcatataaaagggggtatgcaatctctggatcgtggtgaagggaagtta |
19738 |
T |
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| Q |
101 |
agccgacaggattatgtttccttgtctgaaaatcgatcgtcttctttaagcaaggagaaaagggagatcatatatgatatttatcaaatttatgaaaaaa |
200 |
Q |
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| T |
19739 |
agccgtcaggattatgtttccttgtctgaaaatcgatcgtcttctttaagcaaggagaaaagggagatcatatatgatatttatcaaatttatgaaaaaa |
19838 |
T |
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| Q |
201 |
tgaagaggaacaaaggggattttgatttggctgatattgttgttgaccttcatcgtcgacttagaattaacaaatatgagggtgatgaaatgcactttgt |
300 |
Q |
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| T |
19839 |
tgaagaggaacaaaggggattttgatttggctgatattgttgttgaccttcatcgtcgactcagaattaacaaatatgagggtgatgaaatgcactttgt |
19938 |
T |
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| Q |
301 |
atatattgatgaagttcaagatataaccatgagtcaaattgctttatttaaatatgtgagtcgaaatgtagaagaggg |
378 |
Q |
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| T |
19939 |
atatattgatgaagttcaagatataaccatgagtcaaattgctttatttaaatatgtgagtcgaaatgtagaagaggg |
20016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 20 - 286
Target Start/End: Complemental strand, 34604268 - 34604002
Alignment:
| Q |
20 |
gattcatcgagagtgttcactgaaatcgtgtctcatataaaagggggtatgcaatctctggatcgtggtgaagggaagttaagccgacaggattatgttt |
119 |
Q |
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| T |
34604268 |
gattcatctagagtgttcactgaaatcatgtctcatataaaagggagtatgtcatctgtggagtctggtgaagggaagttaagccgtcaagattatcttt |
34604169 |
T |
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| Q |
120 |
ccttgtctgaaaatcgatcgtcttctttaagcaaggagaaaagggagatcatatatgatatttatcaaatttatgaaaaaatgaagaggaacaaagggga |
219 |
Q |
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||| | |||||| || |||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | | || ||||| |
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| T |
34604168 |
tcttttatgaaaaccgggcgtcaagtttaagcaagcggaaaagggagatcatatatgatatttatcaaagttatgaaaaaatgaagatggataaggggga |
34604069 |
T |
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| Q |
220 |
ttttgatttggctgatattgttgttgaccttcatcgtcgacttagaattaacaaatatgagggtgat |
286 |
Q |
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| T |
34604068 |
ttttgatttggctgattttgttgctgaccttcactgccgattcagaattcaaaaatatgagggtgat |
34604002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 375
Target Start/End: Complemental strand, 34603997 - 34603933
Alignment:
| Q |
311 |
gaagttcaagatataaccatgagtcaaattgctttatttaaatatgtgagtcgaaatgtagaaga |
375 |
Q |
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| T |
34603997 |
gaagtgcaggatctaaccatgagtcaaattactttatttaagtatgtgtgtcaaaatgtagaaga |
34603933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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