View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20869_low_54 (Length: 355)
Name: NF20869_low_54
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_54 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 6272259 - 6271930
Alignment:
| Q |
11 |
cagagatctcaaagcaactgctatacataccaccagcactgaaaagtaaaaaatgccaaaagggttttataataatgatcaagcaaggatattaattcat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6272259 |
cagagatctcaaagcaactgctatacataccaccagcactgaaaagtaaaaaatgccaaaagggttttataataatgatcaagcaaggatattaattcat |
6272160 |
T |
|
| Q |
111 |
aaaacacgaatgcatttannnnnnnctgaacttgcataccgtgcctcttccactaaggtgaggagattcttgtttgaaagctcaaccacaattgcatatg |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6272159 |
aaaacacgaatgcatttatttttttctgaacttgcataccgtgcctcttccactaaggtgaggagattcttgtttgaaagctcaaccacaattgcatatg |
6272060 |
T |
|
| Q |
211 |
cttctgtttcatgaatatcatggatttcaacccacatattgattagaacttctagaggaatctttttatcctcaggaaaggagcacaggtccaagaaaca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6272059 |
cttctgtttcatgaatatcatggatttcaacccacatattgattagaacttctagaggaatctttttatcctcaggaaaggagcaaaggtccaagaaaca |
6271960 |
T |
|
| Q |
311 |
ctccttgatcttttcgggtaagtaattagt |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6271959 |
ctccttgatcttttcgggtaagtaattagt |
6271930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 319
Target Start/End: Complemental strand, 6263443 - 6263269
Alignment:
| Q |
145 |
cataccgtgcctcttccactaaggtgaggagattcttgtttgaaagctcaaccacaattgcatatgcttctgtttcatgaatatcatggatttcaaccca |
244 |
Q |
| |
|
||||||| || |||| ||| |||||||| ||||| || || || |||||||| ||||| ||| | || ||| | |||| ||| ||||| ||||||||||| |
|
|
| T |
6263443 |
cataccgcgcttctttcaccaaggtgagaagatttttattggagagctcaacaacaatagcaaaagcatctttctcatcaatgtcatgaatttcaaccca |
6263344 |
T |
|
| Q |
245 |
catattgattagaacttctagaggaatctttttatcctcaggaaaggagcacaggtccaagaaacactccttgat |
319 |
Q |
| |
|
||||||||| ||| | |||||||| || ||||| |||||||| || | |||| ||| ||||| ||||| ||||| |
|
|
| T |
6263343 |
catattgatgagagcatctagagggatttttttgtcctcagggaatgcacacaagtctaagaagcactctttgat |
6263269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 6263588 - 6263547
Alignment:
| Q |
11 |
cagagatctcaaagcaactgctatacataccaccagcactga |
52 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
6263588 |
cagagatctcaaagcaactgctgtacatgccaccagcactga |
6263547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University