View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20869_low_57 (Length: 342)
Name: NF20869_low_57
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_57 |
 | |
|
| [»] chr3 (21 HSPs) |
| |
|
| [»] scaffold0083 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 21)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 11780044 - 11779720
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11780044 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgt |
11779945 |
T |
|
| Q |
118 |
cgtcaataaaagaagtgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattga |
217 |
Q |
| |
|
|||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11779944 |
cgtcaataaaagaaatgaatatcaaaggacttggtgaaaagacacaattgtcattgcttgatagtgattctctatctatgatgcaacatgtagtgattga |
11779845 |
T |
|
| Q |
218 |
aaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttccc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11779844 |
aaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcatttgtcttacatacttgagactccattctctttcttctctcactgcatttccc |
11779745 |
T |
|
| Q |
318 |
ccaagtggtctacccacttcattgc |
342 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
11779744 |
tcaagtggtctacccacttcattgc |
11779720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 11771241 - 11771565
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgt |
117 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11771241 |
ctaagggtacattttcctaccaaccttccttgcatcgaagaaattgtaatcaaaggttgttctcatctattggaaaaaccatctactttgcattggttgt |
11771340 |
T |
|
| Q |
118 |
cgtcaataaaagaagtgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattga |
217 |
Q |
| |
|
|||||||||||||| |||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11771341 |
cgtcaataaaagaaatgaatatcaacggccttggtgaaaagacacagttgtcattgcttgatagtgattctctatctatgatgcaacatgtagtgattga |
11771440 |
T |
|
| Q |
218 |
aaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttccc |
317 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11771441 |
aaagtatgttgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttccc |
11771540 |
T |
|
| Q |
318 |
ccaagtggtctacccacttcattgc |
342 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
11771541 |
ccaagtggtctacccacttcattgc |
11771565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 9840865 - 9841189
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgt |
117 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| ||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
9840865 |
ctaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgt |
9840964 |
T |
|
| Q |
118 |
cgtcaataaaagaagtgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattga |
217 |
Q |
| |
|
| ||||||||| || |||||||||||||||||||||||| | ||||||||||||||||| |||||||||| || | |||||||| ||||||||||||| |
|
|
| T |
9840965 |
cttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccatgtatgatgcaagatgtagtgattga |
9841064 |
T |
|
| Q |
218 |
aaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttccc |
317 |
Q |
| |
|
|||||||| | | |||| |||||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9841065 |
aaagtgtgttaaactattagttgttccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcttctctcactgcatttccc |
9841164 |
T |
|
| Q |
318 |
ccaagtggtctacccacttcattgc |
342 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
9841165 |
tcaagtggtctacccacttcattgc |
9841189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 10519492 - 10519816
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgt |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10519492 |
ctaaggggacatttgcccaccaaccttccttccatagaagaaattgtaataaaaggttgtgttcatctattggaaacaccatctactttgcattggttgt |
10519591 |
T |
|
| Q |
118 |
cgtcaataaaagaagtgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattga |
217 |
Q |
| |
|
| ||||||||| || |||||||||||||||||||||||| | ||||||||||||||||| |||||||||| | | |||||||| |||||| |||| | |
|
|
| T |
10519592 |
cttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccttgtatgatgcaagatgtagagattaa |
10519691 |
T |
|
| Q |
218 |
aaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttccc |
317 |
Q |
| |
|
|||||||| | |||||| || |||||||||||||||| ||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10519692 |
aaagtgtgttaagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgggactcgattctctttcttctctcactgcatttccc |
10519791 |
T |
|
| Q |
318 |
ccaagtggtctacccacttcattgc |
342 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10519792 |
tcaagtggtctacccacttcattgc |
10519816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 10128932 - 10129256
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgt |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
10128932 |
ctaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgt |
10129031 |
T |
|
| Q |
118 |
cgtcaataaaagaagtgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattga |
217 |
Q |
| |
|
| ||||||||| || |||||||||||||||||||||||| | ||||||||||||||||| |||||||||| | | ||||||||||||||| |||| | |
|
|
| T |
10129032 |
cttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagcgattca |
10129131 |
T |
|
| Q |
218 |
aaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttccc |
317 |
Q |
| |
|
|| ||| || |||||| || |||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10129132 |
caactgttctaagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgagactctattctctttcttctctcactgcatttccc |
10129231 |
T |
|
| Q |
318 |
ccaagtggtctacccacttcattgc |
342 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
10129232 |
tcaagtggactacccacttcattgc |
10129256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 9851746 - 9852070
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgt |
117 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
9851746 |
ctaaggggatatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcgttggttgt |
9851845 |
T |
|
| Q |
118 |
cgtcaataaaagaagtgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattga |
217 |
Q |
| |
|
| ||||||||| || |||||||||||||||||||||||| | ||||||||||||||||| |||||||||| | | |||||||| |||||| |||||| |
|
|
| T |
9851846 |
cttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaagatgtagagattga |
9851945 |
T |
|
| Q |
218 |
aaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttccc |
317 |
Q |
| |
|
|||||||| | |||||| || |||||||||||||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||| ||||||||| |
|
|
| T |
9851946 |
aaagtgtgttaagctattagctgtgccaaaattgattatgagaagcacttgtcttacacacttgagactcgattcactttcttctctcaatgcatttcca |
9852045 |
T |
|
| Q |
318 |
ccaagtggtctacccacttcattgc |
342 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
9852046 |
tcaagtggtctacccacttcattgc |
9852070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 10034007 - 10034334
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgt |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
10034007 |
ctaaggggacatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgt |
10034106 |
T |
|
| Q |
118 |
cgtcaataaaagaagtgaatatcaatgggcttg---gtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgat |
214 |
Q |
| |
|
| ||||||||| || |||||||||||||||||| |||||| | ||| ||||||||||||| |||||||||| | | ||||||||||||||| ||| |
|
|
| T |
10034107 |
cttcaataaaaaaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagcgat |
10034206 |
T |
|
| Q |
215 |
tgaaaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcattt |
314 |
Q |
| |
|
| | || ||| || |||||| || ||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
10034207 |
tcacaactgttctaagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttggaactcaattctctttcttctctcactgcattt |
10034306 |
T |
|
| Q |
315 |
cccccaagtggtctacccacttcattgc |
342 |
Q |
| |
|
||| ||||||| |||||||||||||||| |
|
|
| T |
10034307 |
ccctcaagtggactacccacttcattgc |
10034334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 10432106 - 10431779
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaa---ccatctactttgcattggt |
114 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||| |||||||||| ||| |||||||||||| ||| |||||| | ||| ||| ||||||||| |
|
|
| T |
10432106 |
ctaaggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactactggaaacagagccaaacactatgcattggt |
10432007 |
T |
|
| Q |
115 |
tgtcgtcaataaaagaagtgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgat |
214 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| | || ||| | |||||||||||||| |||||||||| | | ||||||||||||||||||| |
|
|
| T |
10432006 |
tgtcgtcaataaagaaagttaatatcaatgggcttgacggaaggaccaatttgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagtgat |
10431907 |
T |
|
| Q |
215 |
tgaaaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcattt |
314 |
Q |
| |
|
|||||| |||| | |||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10431906 |
tgaaaactgtgttaagctattagttgtgccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcttctctcactgcattt |
10431807 |
T |
|
| Q |
315 |
cccccaagtggtctacccacttcattgc |
342 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
10431806 |
ccatcaagtggtctacccacttcattgc |
10431779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 10373907 - 10373580
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgt |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
10373907 |
ctaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgt |
10373808 |
T |
|
| Q |
118 |
cgtcaataaaagaagtgaatatcaatgggcttg---gtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgat |
214 |
Q |
| |
|
| |||||||||||| |||||||||||||||||| |||||| | ||| ||||||||||||| |||||||||| | | |||||||| | ||||| || |
|
|
| T |
10373807 |
cttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttat |
10373708 |
T |
|
| Q |
215 |
tgaaaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcattt |
314 |
Q |
| |
|
| | |||| | || ||| || ||| |||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
10373707 |
tcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcgattctctttcttctctcactgcattt |
10373608 |
T |
|
| Q |
315 |
cccccaagtggtctacccacttcattgc |
342 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
10373607 |
ccctcaagtggtctacccacttcattgc |
10373580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 10361863 - 10361539
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgt |
117 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| | | |||||||||||||||| |
|
|
| T |
10361863 |
ctaaggggacatttgccgagcaaccttccttgcatagaagaaattgtaatacaaggttgttctcatctattggaaacagagcccactttgcattggttgt |
10361764 |
T |
|
| Q |
118 |
cgtcaataaaagaagtgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattga |
217 |
Q |
| |
|
||||||||||| | | || || ||||||||| || || ||| ||||||||||| |||| || ||||||| || | |||||||||||| ||||||| | |
|
|
| T |
10361763 |
cgtcaataaaaaattttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagcgattctccatgtatgatgcaacatgcagtgattca |
10361664 |
T |
|
| Q |
218 |
aaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttccc |
317 |
Q |
| |
|
|||||| ||| ||| ||| |||||||||||||||| |||||||||||||||||||| |||| ||||| | ||||||||||||||||||||||||| |
|
|
| T |
10361663 |
aaagtgcgctatgctgtcatctgtgccaaaattgattctgagaagcacttgtcttacactcttgggactcggtaatctttcttctctcactgcatttccc |
10361564 |
T |
|
| Q |
318 |
ccaagtggtctacccacttcattgc |
342 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10361563 |
tcaagtggtctacccacttcattgc |
10361539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 10090798 - 10091125
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaa---ccatctactttgcattggt |
114 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
10090798 |
ctaaggggacatttgcctagcaaccttccttgcataaaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaacactttgcattggt |
10090897 |
T |
|
| Q |
115 |
tgtcgtcaataaaagaagtgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgat |
214 |
Q |
| |
|
|||||||| |||| || | |||||| ||||| ||||||||| ||| ||||||||||||||||| |||||||||| || | ||||| || |||||||||| |
|
|
| T |
10090898 |
tgtcgtcagtaaagaaaattaatatcgatgggtttggtgaaaggacccaattgtcattgcttgagagtgattctccatgtatgatggaagatgtagtgat |
10090997 |
T |
|
| Q |
215 |
tgaaaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcattt |
314 |
Q |
| |
|
| |||||||||| |||||| || | |||||||| ||||| ||||||||||||||| | |||||| |||| |||||||||| ||| || | ||||| |
|
|
| T |
10090998 |
tcgaaagtgtgctaagctattagctatgccaaaaatgattccaagaagcacttgtcttcaacacttgaaactctattctctttcatctatcgccgcatta |
10091097 |
T |
|
| Q |
315 |
cccccaagtggtctacccacttcattgc |
342 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
10091098 |
ccctcaagtggtctacccacttcattgc |
10091125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 10197680 - 10198007
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaa---ccatctactttgcattggt |
114 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
10197680 |
ctaaggggacatttgcctagcaaccttccttgcataaaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaacactttgcattggt |
10197779 |
T |
|
| Q |
115 |
tgtcgtcaataaaagaagtgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgat |
214 |
Q |
| |
|
|||||||| |||| || | |||||| ||||| ||||||||| ||| ||||||||||||||||| |||||||||| | | ||||| || |||||||||| |
|
|
| T |
10197780 |
tgtcgtcagtaaagaaaattaatatcgatgggtttggtgaaaggacccaattgtcattgcttgagagtgattctccgtgtatgatggaagatgtagtgat |
10197879 |
T |
|
| Q |
215 |
tgaaaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcattt |
314 |
Q |
| |
|
| |||||||||| |||||| || | |||||||| ||||| ||||||||||||||| | |||||| |||| |||||||||| ||| || | ||||| |
|
|
| T |
10197880 |
tcgaaagtgtgctaagctattagctatgccaaaaatgattccaagaagcacttgtcttcaacacttgaaactctattctctttcatctatcgccgcatta |
10197979 |
T |
|
| Q |
315 |
cccccaagtggtctacccacttcattgc |
342 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
10197980 |
ccctcaagtggtctacccacttcattgc |
10198007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 10582617 - 10582942
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgt |
117 |
Q |
| |
|
|||| |||||||||||||| | | ||||||||||| |||||||||| |||| |||||||| |||||||||||||| | | |||||||||||||||| |
|
|
| T |
10582617 |
ctaaagggacatttgcctagccatcttccttgcatagaagaaattgaaatagaaggttgtgttcatctattggaaacagagcccactttgcattggttgt |
10582716 |
T |
|
| Q |
118 |
cgtcaataaaagaag-tgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattg |
216 |
Q |
| |
|
||||||||||| || | || || ||||||||||||||| ||| ||||||| ||||||||| |||||||||| | | |||||||| ||| |||||| | |
|
|
| T |
10582717 |
cgtcaataaaaaaaaattaagattgatgggcttggtgaaaggacccaattgttattgcttgagagtgattctccgtgtatgatgcaagatgcagtgatgg |
10582816 |
T |
|
| Q |
217 |
aaaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcc |
316 |
Q |
| |
|
||| || | | | |||| || |||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
10582817 |
caaactgcgttaacctattagctgtgccaaaattgattctgagaagcacttgtcttacacacttgagactctattctctttcttctctcactacatttcc |
10582916 |
T |
|
| Q |
317 |
cccaagtggtctacccacttcattgc |
342 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
10582917 |
ctcaagtggtctacccacttcattgc |
10582942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 10262705 - 10263032
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaa---ccatctactttgcattggt |
114 |
Q |
| |
|
||||||| ||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
10262705 |
ctaagggaacatttgcctagcaaacttccttgcatagaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaacactttgcattggt |
10262804 |
T |
|
| Q |
115 |
tgtcgtcaataaaagaagtgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgat |
214 |
Q |
| |
|
|||||||| |||| || | |||||| ||||||||| || || ||| ||||||||||||||||| |||||||||| | | |||||||| | ||||| || |
|
|
| T |
10262805 |
tgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttat |
10262904 |
T |
|
| Q |
215 |
tgaaaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcattt |
314 |
Q |
| |
|
| | |||| | || ||| || ||| |||||||||||| |||||||||||||||| ||| |||||| |||| ||||||| ||||||||||| ||||| |
|
|
| T |
10262905 |
tcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtctaacacacttgaaactcagttctcttccttctctcactacattt |
10263004 |
T |
|
| Q |
315 |
cccccaagtggtctacccacttcattgc |
342 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
10263005 |
ccctcaagtggtctacccacttcattgc |
10263032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 40 - 211
Target Start/End: Original strand, 10502612 - 10502783
Alignment:
| Q |
40 |
accttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgtcgtcaataaaagaagtgaatat |
139 |
Q |
| |
|
||||| ||| ||| ||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||| |||||||| | ||| ||| ||||| |
|
|
| T |
10502612 |
acctttctttcatagaagaaattgtaatagaaggttgtgctcatctattggaaacaccgcctactttgcattggctgtcgtcattgaaaaaaggtaatat |
10502711 |
T |
|
| Q |
140 |
caatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagt |
211 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||| ||||| |||| || | |||||||||||||||| |
|
|
| T |
10502712 |
caatgggcttggtgaaaagactcaattatcattgcttgggagtgactctccatgtatgatgcaacatgtagt |
10502783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 241 - 342
Target Start/End: Original strand, 10665696 - 10665797
Alignment:
| Q |
241 |
tgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctacccacttcatt |
340 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||| |||| |||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10665696 |
tgccaaaattgattatgagaagcacttgtcttacacacttggcactctattcactttcttctctcactgcatttccctcaagtggtctacccacttcatt |
10665795 |
T |
|
| Q |
341 |
gc |
342 |
Q |
| |
|
|| |
|
|
| T |
10665796 |
gc |
10665797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 10079417 - 10079550
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgt |
117 |
Q |
| |
|
|||| ||| ||||| |||| | ||||||||||||| ||||||||| | |||||||||||| | |||||||||||| |||| |||||||| |||||||| |
|
|
| T |
10079417 |
ctaaaggggcattttcctagcgaccttccttgcatagaagaaattatgataaaaggttgtgcgaatctattggaaacaccacctactttggattggttgc |
10079516 |
T |
|
| Q |
118 |
cgtcaataaaagaagtgaatatcaatgggcttgg |
151 |
Q |
| |
|
||||| ||||| || | ||||||||||| ||||| |
|
|
| T |
10079517 |
cgtcagtaaaaaaaattaatatcaatggtcttgg |
10079550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 10186387 - 10186520
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgt |
117 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||||| ||||||||| | |||||||||||| | |||||||||| | |||| |||||||| |||||||| |
|
|
| T |
10186387 |
ctaaaggggcatttgcctagtgaccttccttgcatagaagaaattatgataaaaggttgtgcgaatctattggatacaccacctactttggattggttgc |
10186486 |
T |
|
| Q |
118 |
cgtcaataaaagaagtgaatatcaatgggcttgg |
151 |
Q |
| |
|
||||| ||||| || | ||||||||||| ||||| |
|
|
| T |
10186487 |
cgtcagtaaaaaaaattaatatcaatggtcttgg |
10186520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 342
Target Start/End: Complemental strand, 13853344 - 13853199
Alignment:
| Q |
197 |
gatgcaacatgtagtgattgaaaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctt |
296 |
Q |
| |
|
||||||||||| ||||||||||||||||| | ||| ||| | ||||||||||||||||||||||||||| |||| | |||||| |||| || | || |
|
|
| T |
13853344 |
gatgcaacatgcagtgattgaaaagtgtgttatgctgtcatctatgccaaaattgattttgagaagcacttttcttcaacacttgaaactctatgatatt |
13853245 |
T |
|
| Q |
297 |
tcttctctcactgcatttcccccaagtggtctacccacttcattgc |
342 |
Q |
| |
|
| |||||||||| |||||| |||||||||| || ||| |||||| |
|
|
| T |
13853244 |
ccatctctcactgtatttccgtcaagtggtctgccaactccattgc |
13853199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 10665611 - 10665658
Alignment:
| Q |
102 |
actttgcattggttgtcgtcaataaaagaagtgaatatcaatgggctt |
149 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || |||||||||||| |
|
|
| T |
10665611 |
actttgcattggttgtcgtcaataaaaaaagttaaaatcaatgggctt |
10665658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 10530657 - 10530762
Alignment:
| Q |
21 |
aggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgtcgt |
120 |
Q |
| |
|
||||||||||| |||| | |||| ||| ||| ||||||||| |||| |||||||| ||| ||||||||||| |||| ||||||||||||| | || | |
|
|
| T |
10530657 |
aggggacattttcctagccacctatcttccatagaagaaattcaaatagaaggttgtgctcgtctattggaaacaccacatactttgcattggctatcat |
10530756 |
T |
|
| Q |
121 |
caataa |
126 |
Q |
| |
|
|||||| |
|
|
| T |
10530757 |
caataa |
10530762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 55664 - 55340
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgt |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
55664 |
ctaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgt |
55565 |
T |
|
| Q |
118 |
cgtcaataaaagaagtgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattga |
217 |
Q |
| |
|
| ||||||||| | |||||||||||||||||||||||| | ||||||||||||||||| |||||||||| | | ||||||||||||||| |||| | |
|
|
| T |
55564 |
cttcaataaaaataatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagcgattca |
55465 |
T |
|
| Q |
218 |
aaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttccc |
317 |
Q |
| |
|
|| ||| || |||||| || |||||||||||||||| ||| |||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
55464 |
caactgttctaagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgaaactccattcactttcttctctcactgcatttccc |
55365 |
T |
|
| Q |
318 |
ccaagtggtctacccacttcattgc |
342 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
55364 |
tcaagtggactacccacttcattgc |
55340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 24 - 342
Target Start/End: Original strand, 26908901 - 26909219
Alignment:
| Q |
24 |
ggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgtcgtcaa |
123 |
Q |
| |
|
|||| |||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| |||||||||||| |||||| ||||||| | |
|
|
| T |
26908901 |
ggacttttgcctagcaaccttccttgcatagaagaaattgtaataaaaggttgctatcatctattggaaacaccatctactttacattgggtgtcgtcca |
26909000 |
T |
|
| Q |
124 |
taaaagaagtgaatatcaatgggcttggtgaaaagacacaattgtcattgcttgatagtgattctctatctctgatgcaacatgtagtgattgaaaagtg |
223 |
Q |
| |
|
|| || | |||||| ||||||||||| ||| ||| ||||||||||||| | |||||||||| | | |||||||| ||||||||||| |||| || |
|
|
| T |
26909001 |
taccgaaaattaatatccatgggcttggtaaaaggaccatattgtcattgcttaagagtgattctccctgtatgatgcaagatgtagtgattcaaaattg |
26909100 |
T |
|
| Q |
224 |
tgctgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagt |
323 |
Q |
| |
|
|| || ||||| || | |||||||||||||| |||||||||| |||||| | |||||| |||| |||||||||| ||| || | ||||| ||| ||||| |
|
|
| T |
26909101 |
tgttgggctattaggtttgccaaaattgattctgagaagcacatgtcttcaacacttgaaactctattctctttcatctatcgccgcattaccctcaagt |
26909200 |
T |
|
| Q |
324 |
ggtctacccacttcattgc |
342 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
26909201 |
ggtctacccacttcattgc |
26909219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 11487042 - 11487152
Alignment:
| Q |
18 |
ctaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgt |
117 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| ||| ||||| |||| ||||||| | ||||| ||||||| ||||||| ||||||||||||||| |
|
|
| T |
11487042 |
ctaaggggacatttgcctagccaccttccttgcatagaaaaaattaatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgt |
11487141 |
T |
|
| Q |
118 |
cgtcaataaaa |
128 |
Q |
| |
|
||||||||||| |
|
|
| T |
11487142 |
cgtcaataaaa |
11487152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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