View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_59 (Length: 333)
Name: NF20869_low_59
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 39469429 - 39469110
Alignment:
| Q |
1 |
aagcctatcaatgtgttcttctcttgttcgtgttcgaattcacaacaattttctttctggaaaagttcctgttggtcttggcaagcttgagaagcttcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39469429 |
aagcctatcaatgtgttcttctcttgttcgtgttcgaattcacaacaattttctttctggaaaagttcctgttggtcttggcaagcttgagaagcttcaa |
39469330 |
T |
|
| Q |
101 |
aggttagaattagcaaacaatagtctcactggtgaaattccagatgatattccttcttccacgtcactttctttcattgatctctcaagaaacaaacttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39469329 |
aggttagaattagcaaacaatagtctcactggtgaaattccagatgatattccttcttccatgtcactttctttcattgatctctcaagaaacaaacttc |
39469230 |
T |
|
| Q |
201 |
attcttttctcccttccaccattctatccattccaaatcttcaagttttcaaggtctccaataacaacttagaagggaaaattccaggccaatttcagga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39469229 |
attcttttctcccttccaccattctatccattccaaatcttcaagttttcaaggtctccaataacaacttagaagggaaaattccaggccaatttcagga |
39469130 |
T |
|
| Q |
301 |
ctctccttcactaactgttc |
320 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
39469129 |
ctctccttcactaactgttc |
39469110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30088522 - 30088761
Alignment:
| Q |
1 |
aagcctatcaatgtgttcttctcttgttcgtgttcgaattcacaacaattttctttctggaaaagttcctgttggtcttggcaagcttgagaagcttcaa |
100 |
Q |
| |
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||||||||| | ||| |||| || ||||||||||| ||||| ||||||||| ||||||| | | ||||||||||| |||| ||||||||||||||||| |
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| T |
30088522 |
aagcctatccaaatgtccttcactcgttcgtgttcggattcaaaacaattttttttctggtacaattcctgttggttttggtaagcttgagaagcttcag |
30088621 |
T |
|
| Q |
101 |
aggttagaattagcaaacaatagtctcactggtgaaattccagatgatattccttcttccacgtcactttctttcattgatctctcaagaaacaaacttc |
200 |
Q |
| |
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||| ||||||| || ||||||||||||||||||| |||||| || || ||| |||||||||| || ||||| ||||||||| |||| |||||||| || | |
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| T |
30088622 |
aggctagaattggctaacaatagtctcactggtggaattcctgaggacattgcttcttccacatctctttcgttcattgatttctccagaaacaacctcc |
30088721 |
T |
|
| Q |
201 |
attcttttctcccttccaccattctatccattccaaatct |
240 |
Q |
| |
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| |||| ||| |||||||||||| | |||||| ||||||| |
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| T |
30088722 |
actcttctcttccttccaccattatttccatttcaaatct |
30088761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 44261923 - 44261788
Alignment:
| Q |
116 |
aacaatagtctcactggtgaaattccagatgatattccttcttccacgtcactttctttcattgatctctcaagaaacaaacttcattcttttctccctt |
215 |
Q |
| |
|
|||||||||| |||| ||| || ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||| | ||||| |
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| T |
44261923 |
aacaatagtcgcactagtggaactccagatgaaattccttcttccagatcactttctttcattgatctgtcaagaaacatactccattcttctaaccctt |
44261824 |
T |
|
| Q |
216 |
ccaccattctatccattccaaatcttcaagttttca |
251 |
Q |
| |
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|||||||||| | |||||||| ||||||||||||| |
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| T |
44261823 |
ccaccattctttatattccaaaccttcaagttttca |
44261788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 44254294 - 44254180
Alignment:
| Q |
123 |
gtctcactggtgaaattccagatgatattccttcttccacgtcactttctttcattgatctctcaagaaacaaacttcattcttttctcccttccaccat |
222 |
Q |
| |
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||||||| |||| ||||| |||| | ||||||||||||| ||||||||| ||||||| || ||||||||||||| ||||||| |||||||| |||||| |
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| T |
44254294 |
gtctcaccggtggaattcaagataacattccttcttccataccactttcttccattgatgtcacaagaaacaaactccattcttctctccctttcaccat |
44254195 |
T |
|
| Q |
223 |
tctatccattccaaa |
237 |
Q |
| |
|
||| | ||||||||| |
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|
| T |
44254194 |
tctttacattccaaa |
44254180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 44259582 - 44259507
Alignment:
| Q |
176 |
attgatctctcaagaaacaaacttcattcttttctcccttccaccattctatccattccaaatcttcaagttttca |
251 |
Q |
| |
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|||||||| |||||||||||||| | ||||| |||||||||| ||||||| | ||||||||| |||||||||||| |
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| T |
44259582 |
attgatctgtcaagaaacaaactcctttcttctctcccttcctccattctttacattccaaacattcaagttttca |
44259507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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