View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_6 (Length: 679)
Name: NF20869_low_6
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_6 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 663
Target Start/End: Complemental strand, 37320664 - 37319990
Alignment:
| Q |
1 |
tgggtaaggctcaaggaatatacacttcaatatcacaagaggagatgggactaatgatggtgatgaccatggcattcactgatggagatttcaatggaag |
100 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
37320664 |
tgggtaaggctcaaggaatttacacctctatatcacaagaggagatgggactaatgatggtgatgaccatgacattcactgatggacatttcaatggaag |
37320565 |
T |
|
| Q |
101 |
cacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattgttggtggaactggggcttttcgttttgtacgtgggtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
37320564 |
cacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattgttggtggaactggggcttttcgttttgtacgtggttat |
37320465 |
T |
|
| Q |
201 |
gctcaagctaaattttattccgttgattacactaaaggagatgccattgtggagtatgatgtattcgtattccattattagctaggtgta---tta---- |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| ||||| || ||| |
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| T |
37320464 |
gctcaagctaaattttattccgttgattacactaaaggagatgccattgtggagtatgacatatttatgttccattattagttaggtctagccttatagg |
37320365 |
T |
|
| Q |
294 |
--ct--actaaactagagtttannnnnnnatttgttattcggtaaattgttattatgctcctgttacacactcgcacctaaagtgaaagtcaaataggtg |
389 |
Q |
| |
|
|| | ||| ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |
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| T |
37320364 |
tgcttcataaaagtagagtttatattttgatttgttattcagtaaattgttattatgcttctgttacacactctcgcctaaagtgaaagtcaaataggtg |
37320265 |
T |
|
| Q |
390 |
aaataaacatgtaataccacattcgtttataaattcaatatatttatttttagttttaattcaacg-nnnnnnnnnncgaaggaggaatatttggaccaa |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||| |
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|
| T |
37320264 |
aaataaacatgtaataccacattcgtttataaattcaatatatttatttttagttttaattcaacgaagaaaaaaaacgaaggagaaatattttgaccaa |
37320165 |
T |
|
| Q |
489 |
ttcccatgtacggaggtaccctcaacctccccatgaattccgttaaaactgggttgagcatccaatacatttttgtttccccttctcatgtttccttata |
588 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
37320164 |
ttcccatgtacggaggtaccctcaacctccccatgaattccgttaaaactgggttgagcatccaatacagttttgtttccccttctcatgtttccttata |
37320065 |
T |
|
| Q |
589 |
tttcgtgatctccaattattnnnnnnnctcaagatgtcttatgttgttgttccatatttggtcaatgttcaatcc |
663 |
Q |
| |
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|||| |||||||| |||||| |||| |||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
37320064 |
tttcatgatctccgattattaaaaaaactcatgatgtcttgtgttgttgttccatattgggtcaatgttcaatcc |
37319990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 37317085 - 37316775
Alignment:
| Q |
1 |
tgggtaaggctcaaggaatatacacttcaatatcacaagaggagatgggactaatgatggtgatgaccatggcattcactgatggagatttcaatggaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37317085 |
tgggtaaggctcaaggaatttacacttcaatatcacaagaggagatgggactaatgatggtgatgaccatggcattcactgatggagatttcaatggaag |
37316986 |
T |
|
| Q |
101 |
cacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattgttggtggaactggggcttttcgttttgtacgtgggtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316985 |
cacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattgttggtggaactggggcttttcgttttgtacgtgggtat |
37316886 |
T |
|
| Q |
201 |
gctcaagctaaattttattccgttgattacactaaaggagatgccattgtggagtatgatgtattcgtattccattattagctaggtgtattactactaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37316885 |
gctcaagctaaattttattccgttgattacactaaaggagatgccattgtggagtatgatgtattcgtattccattattagctaggtgtattactactaa |
37316786 |
T |
|
| Q |
301 |
actagagttta |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
37316785 |
actagagttta |
37316775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 37324645 - 37324360
Alignment:
| Q |
1 |
tgggtaaggctcaaggaatatacacttcaatatcacaagaggagatgggactaatgatggtgatgaccatggcattcactgatggagatttcaatggaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
37324645 |
tgggtaaggctcaaggaatttacacttctatatcacaagaggagatgggactaatgatggtgatgaccatggcattcactgatggacattttaatggaag |
37324546 |
T |
|
| Q |
101 |
cacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattgttggtggaactggggcttttcgttttgtacgtgggtat |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||| |
|
|
| T |
37324545 |
cacacttagcatattgggtagaaacatgatcatgagtgaacctgttagagaaatggccatagttggtggaaccggggcatttcgtttcgtacgtggatat |
37324446 |
T |
|
| Q |
201 |
gctcaagctaaattttattccgttgattacactaaaggagatgccattgtggagtatgatgtattcgtattccattattagctagg |
286 |
Q |
| |
|
||||| ||||| |||||||| |||||||| || |||||||||||| |||| || ||||| |||| || |||||||||||| |||| |
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|
| T |
37324445 |
gctcaggctaagttttattcggttgattatacaaaaggagatgccgttgtagaatatgacatatttgtgttccattattagttagg |
37324360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 37306740 - 37306524
Alignment:
| Q |
1 |
tgggtaaggctcaaggaatatacacttcaatatcacaagaggagatgggactaatgatggtgatgaccatggcattcactgatggagatttcaatggaag |
100 |
Q |
| |
|
||||||| ||||||||||| ||| || |||||||||||| |||||||||||||||||||| ||||| ||| ||| | || ||||| || |||||||| |
|
|
| T |
37306740 |
tgggtaaagctcaaggaatttacgctgtaatatcacaagatgagatgggactaatgatggttatgacttgggcgttctcagagggagaatttaatggaag |
37306641 |
T |
|
| Q |
101 |
cacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattgttggtggaactggggcttttcgttttgtacgtgggtat |
200 |
Q |
| |
|
||||||||| ||||||| ||| || |||||| ||||||||||| ||||||||||| | ||||||||||||||||||||||| | ||||| ||||| ||| |
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|
| T |
37306640 |
cacacttagtatattggctaggaacatgatcgtgagtgaacctattagagaaatgcctattgttggtggaactggggctttcagatttgttcgtggttat |
37306541 |
T |
|
| Q |
201 |
gctcaagctaaatttta |
217 |
Q |
| |
|
|||||||| || ||||| |
|
|
| T |
37306540 |
gctcaagccaagtttta |
37306524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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