View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20869_low_61 (Length: 331)
Name: NF20869_low_61
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_61 |
 | |
|
| [»] scaffold0161 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 32456477 - 32456786
Alignment:
| Q |
20 |
gaggtgacgatcctccagttaaaacatgaactggnnnnnnnaacggttcagttttgttgaagtttgacagcatgttaagaacaaccggtgcagcacacat |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32456477 |
gaggtgacgatcctcccgttaaaacatgaaccggtttttttaacggttcagttttgttgaagtttgacagcatgttaagaacaaccggtgcagcacacat |
32456576 |
T |
|
| Q |
120 |
gtgtgttacaccatgagattcaatcaaactatagatcgtcggcgcgtctgtcctacgcgtgcagatattaattcctccaactgcagccattgcccacggg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32456577 |
gtgtgttacaccatgagattcaatcaaagtatagatcgtcggcgcgtctgtcctacgcgtgcagatattaattcctccaactgcagccattgcccacggg |
32456676 |
T |
|
| Q |
220 |
tagctccatccattagaatgaaacatcggtaatgtccacaagaaaaccggttgaaccggaactgaccagtcaatgagagaatcaagagaaacaatgaacg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32456677 |
tagctccatccattagaatgaaacatcggtaatgtccacaagaaaaccggttgaaccggaactgaccagtcaatgagagaatcaagagaaacaatgaacg |
32456776 |
T |
|
| Q |
320 |
ttgctctgtg |
329 |
Q |
| |
|
|||||||||| |
|
|
| T |
32456777 |
ttgctctgtg |
32456786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 61 - 326
Target Start/End: Complemental strand, 32464617 - 32464352
Alignment:
| Q |
61 |
aacggttcagttttgttgaagtttgacagcatgttaagaacaaccggtgcagcacacatgtgtgttacaccatgagattcaatcaaactatagatcgtcg |
160 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
32464617 |
aacggttcagttttgttgaaacttgacagcatgttaagcacaaccggtgcagcacacatgtgtgttacaccatgagactcaatcaaacggtagatcgtcg |
32464518 |
T |
|
| Q |
161 |
gcgcgtctgtcctacgcgtgcagatattaattcctccaactgcagccattgcccacgggtagctccatccattagaatgaaacatcggtaatgtccacaa |
260 |
Q |
| |
|
||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
32464517 |
gcgcgtcaatcctacgcgcgcagatatttattcctccaactgcagccattgcccacgggtagctccatccattagaatgaaacataggcaatgtccacaa |
32464418 |
T |
|
| Q |
261 |
gaaaaccggttgaaccggaactgaccagtcaatgagagaatcaagagaaacaatgaacgttgctct |
326 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||| |
|
|
| T |
32464417 |
gaaaaccggttgaaccggaactgaccaatcaacgagtgaatcaagggaaacaatgaacgttgctct |
32464352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 65 - 329
Target Start/End: Complemental strand, 24043 - 23779
Alignment:
| Q |
65 |
gttcagttttgttgaagtttgacagcatgttaagaacaaccggtgcagcacacatgtgtgttacaccatgagattcaatcaaactatagatcgtcggcgc |
164 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| | | ||||||| ||||| |
|
|
| T |
24043 |
gttcatttttgttgaaatttgacagcatgttaagcacaactggtgcagcacacatgtgtgttacaccatgagattcaatcagattgtagatcgatggcgc |
23944 |
T |
|
| Q |
165 |
gtctgtcctacgcgtgcagatattaattcctccaactgcagccattgcccacgggtagctccatccattagaatgaaacatcggtaatgtccacaagaaa |
264 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| || ||||||||| ||||||| ||||||||||| |||||||||||||| | || |||||||||||| |
|
|
| T |
23943 |
gtctgtcctacgtgtgcagatattcgttcctccgacggcagccattccccacggatagctccatccgttagaatgaaacatttgcaacgtccacaagaaa |
23844 |
T |
|
| Q |
265 |
accggttgaaccggaactgaccagtcaatgagagaatcaagagaaacaatgaacgttgctctgtg |
329 |
Q |
| |
|
|| ||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23843 |
actggttgaaccggtaccgaccaatcaatgagagaatcaagtgaaacaatgaacgttgctctgtg |
23779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University