View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20869_low_64 (Length: 328)

Name: NF20869_low_64
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20869_low_64
NF20869_low_64
[»] chr3 (11 HSPs)
chr3 (104-235)||(36982656-36982785)
chr3 (104-235)||(37008095-37008224)
chr3 (115-238)||(14859067-14859189)
chr3 (151-238)||(21817370-21817456)
chr3 (153-201)||(4953405-4953453)
chr3 (158-238)||(21815910-21815989)
chr3 (164-241)||(18734160-18734236)
chr3 (164-211)||(49220374-49220421)
chr3 (164-205)||(26247162-26247203)
chr3 (164-205)||(43465104-43465145)
chr3 (104-168)||(53227194-53227258)
[»] scaffold0596 (1 HSPs)
scaffold0596 (11-80)||(8438-8507)
[»] chr7 (9 HSPs)
chr7 (105-207)||(10990522-10990624)
chr7 (151-238)||(26024889-26024975)
chr7 (151-238)||(21709160-21709246)
chr7 (109-207)||(38030359-38030457)
chr7 (151-207)||(21710571-21710627)
chr7 (117-227)||(38031544-38031648)
chr7 (153-201)||(24485816-24485864)
chr7 (169-202)||(6000516-6000549)
chr7 (164-205)||(17052371-17052412)
[»] chr1 (12 HSPs)
chr1 (11-80)||(47751416-47751485)
chr1 (151-238)||(51597963-51598049)
chr1 (151-207)||(16962042-16962098)
chr1 (166-208)||(7714203-7714245)
chr1 (104-201)||(38657714-38657811)
chr1 (151-207)||(16963396-16963452)
chr1 (164-211)||(45822815-45822862)
chr1 (151-238)||(51599403-51599489)
chr1 (164-202)||(39277874-39277912)
chr1 (153-202)||(30049952-30050001)
chr1 (164-200)||(47421930-47421966)
chr1 (164-208)||(52285344-52285388)
[»] chr4 (24 HSPs)
chr4 (137-238)||(4892067-4892167)
chr4 (104-207)||(33075141-33075244)
chr4 (151-238)||(757469-757555)
chr4 (151-238)||(701635-701721)
chr4 (151-238)||(769934-770020)
chr4 (116-238)||(4890828-4890950)
chr4 (151-238)||(35060423-35060509)
chr4 (104-201)||(53595022-53595119)
chr4 (151-240)||(16039648-16039736)
chr4 (151-248)||(35055325-35055421)
chr4 (151-238)||(702620-702706)
chr4 (151-238)||(756489-756575)
chr4 (151-238)||(770919-771005)
chr4 (131-194)||(9461625-9461688)
chr4 (123-237)||(11198919-11199034)
chr4 (164-202)||(55620230-55620268)
chr4 (164-202)||(55627534-55627572)
chr4 (164-201)||(51399254-51399291)
chr4 (151-207)||(16038307-16038363)
chr4 (164-202)||(1113247-1113285)
chr4 (83-113)||(35055391-35055421)
chr4 (153-202)||(24039287-24039336)
chr4 (164-205)||(44304016-44304057)
chr4 (173-205)||(14251497-14251529)
[»] chr6 (8 HSPs)
chr6 (123-238)||(20489383-20489496)
chr6 (151-238)||(21282819-21282905)
chr6 (151-207)||(21612851-21612907)
chr6 (151-248)||(5659096-5659193)
chr6 (116-208)||(20488291-20488383)
chr6 (151-238)||(21611917-21612003)
chr6 (112-201)||(28866351-28866440)
chr6 (112-168)||(12586730-12586786)
[»] chr8 (15 HSPs)
chr8 (137-235)||(22191862-22191958)
chr8 (151-238)||(39270764-39270850)
chr8 (151-207)||(39568478-39568534)
chr8 (104-201)||(16905293-16905390)
chr8 (153-201)||(21015213-21015261)
chr8 (151-207)||(44633744-44633800)
chr8 (151-238)||(45378518-45378604)
chr8 (164-202)||(36194664-36194702)
chr8 (112-200)||(22595076-22595164)
chr8 (151-237)||(44632709-44632794)
chr8 (164-205)||(10134900-10134941)
chr8 (145-202)||(13557412-13557469)
chr8 (169-202)||(31933568-31933601)
chr8 (151-207)||(39567095-39567151)
chr8 (173-205)||(40832407-40832439)
[»] scaffold0042 (1 HSPs)
scaffold0042 (104-238)||(91421-91553)
[»] chr2 (7 HSPs)
chr2 (104-207)||(36888370-36888472)
chr2 (137-207)||(36889703-36889773)
chr2 (164-205)||(16581577-16581618)
chr2 (164-207)||(20899564-20899607)
chr2 (116-194)||(11129927-11130005)
chr2 (145-202)||(12701964-12702021)
chr2 (164-205)||(16203735-16203776)
[»] scaffold0031 (3 HSPs)
scaffold0031 (151-238)||(129389-129475)
scaffold0031 (151-238)||(123426-123512)
scaffold0031 (151-238)||(134302-134388)
[»] chr5 (4 HSPs)
chr5 (164-201)||(18508814-18508851)
chr5 (164-201)||(35463855-35463892)
chr5 (164-205)||(1983541-1983582)
chr5 (173-205)||(17115620-17115652)
[»] scaffold0220 (2 HSPs)
scaffold0220 (153-201)||(26001-26049)
scaffold0220 (164-205)||(26255-26296)
[»] scaffold2010 (1 HSPs)
scaffold2010 (178-237)||(926-983)


Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 104 - 235
Target Start/End: Complemental strand, 36982785 - 36982656
Alignment:
Q  104 tttttattaaacctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatacta 203  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| |||     
T  36982785 tttttattaaacctaacggaagagactaaaacgtgtaacgaaaataaatgtaaaggactcaaacagactttttattacttatgggaccaaagcgacactt 36982686  T
Q  204 aaaattaaacttaaaggatgaaaatagcaatt 235  Q
    ||||  ||| |||| ||| |||||||| ||||    
T  36982685 aaaa--aaaattaagggacgaaaatagaaatt 36982656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 104 - 235
Target Start/End: Complemental strand, 37008224 - 37008095
Alignment:
Q  104 tttttattaaacctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatacta 203  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| |||     
T  37008224 tttttattaaacctaacggaagagactaaaacgtgtaacgaaaataaatgtaaaggactcaaacagactttttattacttatgggaccaaagcgacactt 37008125  T
Q  204 aaaattaaacttaaaggatgaaaatagcaatt 235  Q
    ||||  ||| |||| ||| |||||||| ||||    
T  37008124 aaaa--aaaattaagggacgaaaatagaaatt 37008095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 14859067 - 14859189
Alignment:
Q  115 cctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaact 214  Q
    ||||||| ||||||| ||||  ||||| |||||| |||||||| |||||||| |||||||||||||||||||| |||||| ||||||||||||  | | |    
T  14859067 cctaacggaagggaccaaaaagtgtaatgaaaattaatttaaatgactcaaatagactttttattacttatggaaccaaagcgatactaaaaa-aatatt 14859165  T
Q  215 taaaggatgaaaatagcaattaag 238  Q
    ||| ||| ||||||||||||||||    
T  14859166 taagggaagaaaatagcaattaag 14859189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 21817370 - 21817456
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |  | |||| |||||||||||| |||||||    
T  21817370 atttaaaggactcaaacagactttttattaattatgggaccaaagcgataccaaaaaat-tagttaagggatgaaaatagtaattaag 21817456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 4953405 - 4953453
Alignment:
Q  153 ttaaaggactcaaacagactttttattacttatgggaccaaatcgatac 201  Q
    |||| ||||| ||||||||||||||||||||||||||||||| ||||||    
T  4953405 ttaagggacttaaacagactttttattacttatgggaccaaaacgatac 4953453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 21815989 - 21815910
Alignment:
Q  158 ggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    |||||||||| |||||||||||| |||||| |||||| |||||||||||| |  | |||| ||| ||||||||||||||||    
T  21815989 ggactcaaacggactttttattaattatggaaccaaagcgatactaaaaaat-tagttaagggacgaaaatagcaattaag 21815910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 18734160 - 18734236
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaagtct 241  Q
    ||||||||||||||||||||| ||||||||  ||||||| |||| |||| |||| |||| |||| |||| ||||||||    
T  18734160 aaacagactttttattacttaagggaccaagccgatacttaaaa-taaagttaatggatcaaaagagcatttaagtct 18734236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 49220374 - 49220421
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatactaaaaattaa 211  Q
    ||||||||||||||||| ||||||||||||| |||||||  |||||||    
T  49220374 aaacagactttttattatttatgggaccaaaccgatacttgaaattaa 49220421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 26247162 - 26247203
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatactaaa 205  Q
    |||| ||| |||||||||||||||||||||| ||||||||||    
T  26247162 aaacggaccttttattacttatgggaccaaagcgatactaaa 26247203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 43465104 - 43465145
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatactaaa 205  Q
    |||| ||| |||||||||||||||||||||| ||||||||||    
T  43465104 aaacggacattttattacttatgggaccaaaacgatactaaa 43465145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 53227258 - 53227194
Alignment:
Q  104 tttttattaaacctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaaca 168  Q
    |||||||||||||||||| || | || ||||  |||||||||||| || |||||| |||||||||    
T  53227258 tttttattaaacctaacggaatgaaccaaaaaatgtaacgaaaattaaattaaagtactcaaaca 53227194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 8438 - 8507
Alignment:
Q  11 cacagatccttcattgctactattactaacgatgttgaacctacatgttatgaacaagctgcctcccaat 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8438 cacagatccttcattgctactattactaacgatgttgaacctacatgttatgaacaagctgcctcccaat 8507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 105 - 207
Target Start/End: Original strand, 10990522 - 10990624
Alignment:
Q  105 ttttattaaacctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaa 204  Q
    |||||||||| || ||| ||| ||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  10990522 ttttattaaaactgacggaagagactaaaatatgtaacgaagatgaatttaaaggactcaaacagactttttattacttatgggatcaaagcgatactaa 10990621  T
Q  205 aaa 207  Q
    |||    
T  10990622 aaa 10990624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 26024975 - 26024889
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| | || |||| ||| ||| ||||||||||||    
T  26024975 atttaaaggactcaaacagactttttattaattatgggaccaaagcgataccaaaaaat-aagttaagggacgaagatagcaattaag 26024889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 21709246 - 21709160
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    |||||||||||| |||| |||||||||||| ||||||||||||| |||||||||||| |  | |||| ||| ||||||||||||||||    
T  21709246 atttaaaggacttaaacggactttttattaattatgggaccaaagcgatactaaaaaat-tagttaagggacgaaaatagcaattaag 21709160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 38030457 - 38030359
Alignment:
Q  109 attaaacctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaa 207  Q
    |||||| ||||| |||||| ||||||  ||||||  | ||||| |||||||| | ||| |||||||||||||||||||||| |||| ||||||||||||    
T  38030457 attaaatctaacaaaaggggctaaaatgtgtaacatagatgaaattaaaggattgaaatagactttttattacttatgggatcaaagcgatactaaaaa 38030359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 21710571 - 21710627
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaa 207  Q
    ||||||||||||||||| |||||||||||| ||||||||||||| |||||| |||||    
T  21710571 atttaaaggactcaaacggactttttattaattatgggaccaaagcgataccaaaaa 21710627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 38031544 - 38031648
Alignment:
Q  117 taacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaactta 216  Q
    |||||||| |||| |||| |||||||| ||||||| ||||||||    |||| |||||| ||||| |||||||||||| | ||||||||||  |||||||    
T  38031544 taacgaaaaggaccaaaaattgtaacggaaatgaaattaaagga----aacaaacttttcattacatatgggaccaaaactatactaaaaa--aaactta 38031637  T
Q  217 aaggatgaaaa 227  Q
    | ||| |||||    
T  38031638 agggacgaaaa 38031648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 24485816 - 24485864
Alignment:
Q  153 ttaaaggactcaaacagactttttattacttatgggaccaaatcgatac 201  Q
    |||| ||||| |||| |||||||||||||||||||||||||| ||||||    
T  24485816 ttaagggacttaaacggactttttattacttatgggaccaaaacgatac 24485864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 6000549 - 6000516
Alignment:
Q  169 gactttttattacttatgggaccaaatcgatact 202  Q
    |||||||||||||||||||||||||| |||||||    
T  6000549 gactttttattacttatgggaccaaaccgatact 6000516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 17052412 - 17052371
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatactaaa 205  Q
    |||| ||| |||||||||||||||||||||| ||||||||||    
T  17052412 aaaccgaccttttattacttatgggaccaaagcgatactaaa 17052371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 47751416 - 47751485
Alignment:
Q  11 cacagatccttcattgctactattactaacgatgttgaacctacatgttatgaacaagctgcctcccaat 80  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47751416 cacagacccttcattgctactattactaacgatgttgaacctacatgttatgaacaagctgcctcccaat 47751485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 51598049 - 51597963
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    ||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||| | || |||| ||| ||||||||||||||||    
T  51598049 atttaaaggactcaaacggactttttattaattatgggaccaaagcgataccaaaaaat-aagttaagggacgaaaatagcaattaag 51597963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 16962098 - 16962042
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaa 207  Q
    |||||||||||||||||||||||||||||| |||| |||||||| | |||| |||||    
T  16962098 atttaaaggactcaaacagactttttattaattataggaccaaagcaataccaaaaa 16962042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 7714245 - 7714203
Alignment:
Q  166 acagactttttattacttatgggaccaaatcgatactaaaaat 208  Q
    ||||||||||||||||||||||||||||| ||||||| |||||    
T  7714245 acagactttttattacttatgggaccaaaccgatacttaaaat 7714203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 38657811 - 38657714
Alignment:
Q  104 tttttattaaacctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatac 201  Q
    |||||||||||||||||| ||||||| ||||  | ||| |||||| || |||||  |||||||||  |||||| ||| ||| ||||||||| ||||||    
T  38657811 tttttattaaacctaacggaagggaccaaaaaatataatgaaaattaaattaaaatactcaaacaatcttttttttagttaagggaccaaaacgatac 38657714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 16963396 - 16963452
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaa 207  Q
    ||||||||||||||||   ||||||||||| ||||| |||||||||||||| |||||    
T  16963396 atttaaaggactcaaatgaactttttattaattatgagaccaaatcgataccaaaaa 16963452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 45822862 - 45822815
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatactaaaaattaa 211  Q
    |||| ||||||||||||||||||||||||||| ||||||  |||||||    
T  45822862 aaacggactttttattacttatgggaccaaattgatacttgaaattaa 45822815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 51599403 - 51599489
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    |||||||| |||||||| |||||||||||| |||| ||| |||| |||||| ||||| |  | |||| ||| ||||||||||||||||    
T  51599403 atttaaagaactcaaacggactttttattaattataggatcaaagcgataccaaaaaat-tagttaagggacgaaaatagcaattaag 51599489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 39277874 - 39277912
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatact 202  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  39277874 aaacggactttttattacttatgggaccaaaccgatact 39277912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 30050001 - 30049952
Alignment:
Q  153 ttaaaggactcaaacagactttttattacttatgggaccaaatcgatact 202  Q
    |||| |||||||||| ||||||||||||| |||| ||||||| |||||||    
T  30050001 ttaagggactcaaacggactttttattacatatgagaccaaaccgatact 30049952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 47421966 - 47421930
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgata 200  Q
    |||||||| |||||||||||||||||||||| |||||    
T  47421966 aaacagacattttattacttatgggaccaaaccgata 47421930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 52285344 - 52285388
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatactaaaaat 208  Q
    |||||||| ||||||||||||| ||||||||| |||||| |||||    
T  52285344 aaacagaccttttattacttataggaccaaattgatacttaaaat 52285388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 4892067 - 4892167
Alignment:
Q  137 tgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaatta 236  Q
    |||||||||||||||||||| |||||||||||||  |||||||||||||| |||| || ||||||||||||  |||||||| ||||||||||||||||||    
T  4892067 tgtaacgaaaatgaatttaagggactcaaacagatcttttattacttatgcgacctaagcgatactaaaaa-aaaacttaagggatgaaaatagcaatta 4892165  T
Q  237 ag 238  Q
    ||    
T  4892166 ag 4892167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 33075141 - 33075244
Alignment:
Q  104 tttttattaaacctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatacta 203  Q
    |||||||||||||||||| ||| ||||||||| ||||||||||||  || ||||| |||||||| |||||||||||||||||||||||||| ||| |||     
T  33075141 tttttattaaacctaacggaagagactaaaacgtgtaacgaaaatatatgtaaagtactcaaacggactttttattacttatgggaccaaagcgacactt 33075240  T
Q  204 aaaa 207  Q
    ||||    
T  33075241 aaaa 33075244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 757469 - 757555
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    ||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||| | || |||| ||||||||||||||||||||    
T  757469 atttaaaggactcaaactgactttttattaattatgggaccaaagcgataccaaaaaat-aagttaagggatgaaaatagcaattaag 757555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 701721 - 701635
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    ||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||| | || |||| ||| ||||||||||||||||    
T  701721 atttaaaggactcaaacggactttttattaattatgggaccaaagcgataccaaaaaat-aagttaagggacgaaaatagcaattaag 701635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 770020 - 769934
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    ||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||| | || |||| ||| ||||||||||||||||    
T  770020 atttaaaggactcaaacggactttttattaattatgggaccaaagcgataccaaaaaat-aagttaagggacgaaaatagcaattaag 769934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 116 - 238
Target Start/End: Complemental strand, 4890950 - 4890828
Alignment:
Q  116 ctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaactt 215  Q
    |||||| || |||| ||||  |||||||||||| ||||||||||||||||||| || ||||||||||||| ||  |||| |||||||||| |    ||||    
T  4890950 ctaacggaaaggaccaaaaagtgtaacgaaaataaatttaaaggactcaaacaaaccttttattacttataggggcaaagcgatactaaagaaactactt 4890851  T
Q  216 aaaggatgaaaatagcaattaag 238  Q
    || ||| ||||||||||||||||    
T  4890850 aagggacgaaaatagcaattaag 4890828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 35060423 - 35060509
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    ||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||| |  | |||| ||| ||||||||||||||||    
T  35060423 atttaaaggactcaaacggactttttattaattatgggaccaaagcgataccaaaaaat-tagttaagggacgaaaatagcaattaag 35060509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 53595119 - 53595022
Alignment:
Q  104 tttttattaaacctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatac 201  Q
    |||||||||||||||||| || |||| ||||  |||||||||||| || |||||| |||||||||  |||||| ||| ||| ||||||||| ||||||    
T  53595119 tttttattaaacctaacggaatggaccaaaaaatgtaacgaaaattaaattaaagtactcaaacaatcttttttttagttaagggaccaaagcgatac 53595022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 16039648 - 16039736
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaagtc 240  Q
    ||||||||||||||||| |||||||||||| |||||||||| || |||||| ||||| |  | |||| |||  |||||||||||||||||    
T  16039648 atttaaaggactcaaacggactttttattaattatgggaccgaaacgataccaaaaaat-tagttaagggacaaaaatagcaattaagtc 16039736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 35055421 - 35055325
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaagtcttgttttt 248  Q
    ||||||||||||||||  |||||||||||| ||||||||||||| |||||| ||||| |  | |||| ||| ||||||| |||||||| ||| |||||    
T  35055421 atttaaaggactcaaatggactttttattaattatgggaccaaagcgataccaaaaaat-tagttaagggacgaaaataacaattaagccttcttttt 35055325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 702620 - 702706
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    |||||||||||| || | |||||||||||| ||||||||||||| |||||| ||||| |  | |||| ||| ||||||||||||||||    
T  702620 atttaaaggacttaagcggactttttattaattatgggaccaaagcgataccaaaaaat-tagttaagggacgaaaatagcaattaag 702706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 756575 - 756489
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    |||||||||||| || | |||||||||||| ||||||||||||| |||||| ||||| |  | |||| ||| ||||||||||||||||    
T  756575 atttaaaggacttaagcggactttttattaattatgggaccaaagcgataccaaaaaat-tagttaagggacgaaaatagcaattaag 756489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 770919 - 771005
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    |||||||||||| || | |||||||||||| ||||||||||||| |||||| ||||| |  | |||| ||| ||||||||||||||||    
T  770919 atttaaaggacttaagcggactttttattaattatgggaccaaagcgataccaaaaaat-tagttaagggacgaaaatagcaattaag 771005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 9461688 - 9461625
Alignment:
Q  131 aaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaa 194  Q
    |||| |||||||||||||||||||||| || |||||| | || ||||||||||||| |||||||    
T  9461688 aaaaattgtaacgaaaatgaatttaaaagattcaaacggtctctttattacttatgagaccaaa 9461625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 11199034 - 11198919
Alignment:
Q  123 aagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagac-tttttattacttatgggaccaaatcgatactaaaaattaaacttaaagga 221  Q
    ||||||||||||   ||||| || ||||| ||||||| || |||  ||| |||||||||||||||||||||||  |||||||||||  ||||||||  ||    
T  11199034 aagggactaaaagcggtaacaaagatgaaattaaagggcttaaatggacgtttttattacttatgggaccaaagtgatactaaaaaaaaaacttaagtga 11198935  T
Q  222 tgaaaatagcaattaa 237  Q
     ||||||| |||||||    
T  11198934 cgaaaatatcaattaa 11198919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 55620268 - 55620230
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatact 202  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  55620268 aaacagactttttattacttatgggaccaaaccgatact 55620230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 55627572 - 55627534
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatact 202  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  55627572 aaacagactttttattacttatgggaccaaaccgatact 55627534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 51399291 - 51399254
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatac 201  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  51399291 aaacagactttttattacttatgggaccaaagcgatac 51399254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 16038363 - 16038307
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaa 207  Q
    ||||||||||||||||  || ||||||||| ||||||||||||| |||||| |||||    
T  16038363 atttaaaggactcaaatggattttttattaattatgggaccaaagcgataccaaaaa 16038307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 1113285 - 1113247
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatact 202  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  1113285 aaacagactttttattacttatgggaccaacccgatact 1113247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 113
Target Start/End: Complemental strand, 35055421 - 35055391
Alignment:
Q  83 atttaaaggactcaaatggactttttattaa 113  Q
    |||||||||||||||||||||||||||||||    
T  35055421 atttaaaggactcaaatggactttttattaa 35055391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 24039336 - 24039287
Alignment:
Q  153 ttaaaggactcaaacagactttttattacttatgggaccaaatcgatact 202  Q
    |||||||||  ||||  ||||||||||||||||||||||||| |||||||    
T  24039336 ttaaaggacctaaacgaactttttattacttatgggaccaaaccgatact 24039287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 44304057 - 44304016
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatactaaa 205  Q
    |||| ||| |||||||||||||||||||||| ||||||||||    
T  44304057 aaacggaccttttattacttatgggaccaaagcgatactaaa 44304016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 14251497 - 14251529
Alignment:
Q  173 ttttattacttatgggaccaaatcgatactaaa 205  Q
    |||||||||||||||||||||| ||||||||||    
T  14251497 ttttattacttatgggaccaaagcgatactaaa 14251529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 20489383 - 20489496
Alignment:
Q  123 aagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggat 222  Q
    ||||||| ||||  |||||||||||| || |||||||||||||||| ||||||||||||||||||||||||| | ||||||||||  |||| ||| |||     
T  20489383 aagggaccaaaaagtgtaacgaaaataaaattaaaggactcaaacatactttttattacttatgggaccaaagcaatactaaaaa--aaacataagggac 20489480  T
Q  223 gaaaatagcaattaag 238  Q
     |||||||||||||||    
T  20489481 taaaatagcaattaag 20489496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 21282905 - 21282819
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    ||||||| |||||||||||||||||||||| ||||||||||||| |||||| ||||| | || |||| ||| ||||||||||||||||    
T  21282905 atttaaaagactcaaacagactttttattaattatgggaccaaagcgatacaaaaaaattaa-ttaagggacgaaaatagcaattaag 21282819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 21612851 - 21612907
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaa 207  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||    
T  21612851 atttaaaggactcaaacagactttttattaattatgggaccaaaacgataccaaaaa 21612907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 5659193 - 5659096
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatg-aaaatagcaattaagtcttgttttt 248  Q
    |||||||||||||||||||||||||||||| |||||||||||||  ||||| ||||| |  | |||| ||| | ||||||||||||||||||| |||||    
T  5659193 atttaaaggactcaaacagactttttattaattatgggaccaaagtgataccaaaaaat-tagttaagggacgaaaaatagcaattaagtctttttttt 5659096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 20488383 - 20488291
Alignment:
Q  116 ctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaat 208  Q
    |||||| ||||||| ||||  ||||||  | ||||| |||||||||| ||||| |||||||||||||||| | |||||| |||||||||||||    
T  20488383 ctaacggaagggaccaaaatatgtaacagagatgaaattaaaggactgaaacaaactttttattacttatagaaccaaagcgatactaaaaat 20488291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 21612003 - 21611917
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    |||||||| |||||||| || ||||||||| |||||||||||||||||||| ||||| |  | |||| ||| ||||||||||||||||    
T  21612003 atttaaagaactcaaacggattttttattaattatgggaccaaatcgataccaaaaaat-tagttaagggacgaaaatagcaattaag 21611917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 28866351 - 28866440
Alignment:
Q  112 aaacctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatac 201  Q
    |||||||||| || |||| ||||  |||||||||||| || |||||| |||||||||  |||||| ||| ||| ||||||||| ||||||    
T  28866351 aaacctaacggaatggaccaaaaaatgtaacgaaaattaaattaaagtactcaaacaatcttttttttagttaagggaccaaagcgatac 28866440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 12586786 - 12586730
Alignment:
Q  112 aaacctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaaca 168  Q
    |||||||||| ||||||| ||||  |||||||||||| || |||||| |||||||||    
T  12586786 aaacctaacggaagggaccaaaaaatgtaacgaaaattaaattaaagtactcaaaca 12586730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 22191862 - 22191958
Alignment:
Q  137 tgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaatt 235  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||  | |||||| ||| ||||||| |||||    
T  22191862 tgtaacgaaaattaatttaaaagactcaaacagactttttattacttacgggaccaaagcgatactaaaaa--atacttaagggacgaaaataacaatt 22191958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 39270764 - 39270850
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    ||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||| | || |||| ||| ||||||||||||||||    
T  39270764 atttaaaggactcaaacggactttttattaattatgggaccaaaacgataccaaaaaat-aagttaagggacgaaaatagcaattaag 39270850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 39568478 - 39568534
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaa 207  Q
    |||||||||||||||||| ||||||||||| |||||| |||||| ||||||||||||    
T  39568478 atttaaaggactcaaacaaactttttattaattatggaaccaaaacgatactaaaaa 39568534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 16905390 - 16905293
Alignment:
Q  104 tttttattaaacctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatac 201  Q
    |||||||||||||||||| ||||||| ||||  ||||| |||||| || |||||| |||||||||  |||||| ||| | | ||||||||| ||||||    
T  16905390 tttttattaaacctaacggaagggaccaaaaaatgtaatgaaaattaaattaaagtactcaaacaatcttttttttagtcaagggaccaaagcgatac 16905293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 21015213 - 21015261
Alignment:
Q  153 ttaaaggactcaaacagactttttattacttatgggaccaaatcgatac 201  Q
    |||| |||| |||||||||||||||||||||||||||||||| ||||||    
T  21015213 ttaagggacccaaacagactttttattacttatgggaccaaagcgatac 21015261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 44633744 - 44633800
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaa 207  Q
    |||||||||||||||| | ||||||||||| ||||||||||||| |||||| |||||    
T  44633744 atttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaa 44633800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 45378518 - 45378604
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    |||||||||||| ||||| | ||||||||| ||||||||||||| |||||| ||||| |  | |||| ||| ||||||||||||||||    
T  45378518 atttaaaggactgaaacataatttttattaattatgggaccaaagcgataccaaaaaat-tatttaagggacgaaaatagcaattaag 45378604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 36194702 - 36194664
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatact 202  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  36194702 aaacagactttttattacttatgggaccaaaacgatact 36194664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 22595076 - 22595164
Alignment:
Q  112 aaacctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgata 200  Q
    |||||||| | ||||||| ||||  |||||||||||| || |||||| |||||||||  |||||| ||| ||| ||||||||| |||||    
T  22595076 aaacctaatggaagggacaaaaaaatgtaacgaaaattaaattaaagtactcaaacaatcttttttttagttaagggaccaaagcgata 22595164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 44632794 - 44632709
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaa 237  Q
    |||||||||||||||||  | ||||||||| || |||||||||| |||||| ||||| | || ||||  || |||||||||||||||    
T  44632794 atttaaaggactcaaacgaattttttattaattttgggaccaaaacgataccaaaaaattaa-ttaagagacgaaaatagcaattaa 44632709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 10134900 - 10134941
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatactaaa 205  Q
    |||| ||| |||||||||||||||||||||| ||||||||||    
T  10134900 aaacggaccttttattacttatgggaccaaagcgatactaaa 10134941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 13557412 - 13557469
Alignment:
Q  145 aaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatact 202  Q
    ||||||| |||| ||||  |||| ||| |||||||||||||||||||||| |||||||    
T  13557412 aaatgaagttaagggacctaaacggaccttttattacttatgggaccaaaccgatact 13557469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 31933568 - 31933601
Alignment:
Q  169 gactttttattacttatgggaccaaatcgatact 202  Q
    |||||||||||||||||||||||||| |||||||    
T  31933568 gactttttattacttatgggaccaaaccgatact 31933601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 39567151 - 39567095
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaa 207  Q
    ||||||||||||||||   ||||||||| | ||||||||||||| |||||| |||||    
T  39567151 atttaaaggactcaaatgaactttttatcaattatgggaccaaagcgataccaaaaa 39567095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 40832407 - 40832439
Alignment:
Q  173 ttttattacttatgggaccaaatcgatactaaa 205  Q
    |||||||||||||||||||||| ||||||||||    
T  40832407 ttttattacttatgggaccaaagcgatactaaa 40832439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 91421 - 91553
Alignment:
Q  104 tttttattaaacctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatacta 203  Q
    |||| ||||||| ||||| ||||||| ||||  |||||| ||||| || |||||| ||||||||| || |||| ||||||| ||||||||||||||||||    
T  91421 ttttaattaaacttaacggaagggaccaaaagctgtaacaaaaattaaattaaagtactcaaacatacgtttt-ttacttaagggaccaaatcgatacta 91519  T
Q  204 aaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    |||| ||||||||| |||  |||||| ||||||||    
T  91520 aaaa-taaacttaagggaccaaaataacaattaag 91553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 36888472 - 36888370
Alignment:
Q  104 tttttattaaacctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatacta 203  Q
    |||| ||||||||||||| || | || ||||  |||||| ||||| || |||||||||||||||||||||||||||| ||||||||||||| |||||| |    
T  36888472 ttttaattaaacctaacggaaag-accaaaaggtgtaacaaaaattaaattaaaggactcaaacagactttttattagttatgggaccaaaccgatacca 36888374  T
Q  204 aaaa 207  Q
    ||||    
T  36888373 aaaa 36888370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 36889703 - 36889773
Alignment:
Q  137 tgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaa 207  Q
    |||||| ||||| || |||||||| ||||| ||||||||||||| ||||||||||||| |||||| |||||    
T  36889703 tgtaacaaaaattaaattaaaggattcaaatagactttttattaattatgggaccaaaccgataccaaaaa 36889773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 16581577 - 16581618
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatactaaa 205  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  16581577 aaacagaccttttattacttatgggaccaaagcgatactaaa 16581618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 20899607 - 20899564
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatactaaaaa 207  Q
    ||||||||||||||||||||| |||||||||  |||||||||||    
T  20899607 aaacagactttttattacttaagggaccaaactgatactaaaaa 20899564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 11130005 - 11129927
Alignment:
Q  116 ctaacgaaagggactaaaacttgtaacgaaaatgaatttaaaggactcaaacagactttttattacttatgggaccaaa 194  Q
    |||||||||||||| ||||  |||||| ||||| || |||||| ||| |||||  |||||||||| ||| |||||||||    
T  11130005 ctaacgaaagggaccaaaaagtgtaacaaaaattaaattaaagtactgaaacaatctttttattagttaagggaccaaa 11129927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 12702021 - 12701964
Alignment:
Q  145 aaatgaatttaaaggactcaaacagactttttattacttatgggaccaaatcgatact 202  Q
    ||||||| |||| ||||  |||| ||| |||||||||||||||||||||| |||||||    
T  12702021 aaatgaagttaagggacctaaacggaccttttattacttatgggaccaaaccgatact 12701964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 16203735 - 16203776
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatactaaa 205  Q
    |||| ||| |||||||||||||||||||||| ||||||||||    
T  16203735 aaacggaccttttattacttatgggaccaaagcgatactaaa 16203776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 129389 - 129475
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaag 238  Q
    ||||||||||||||||| |||||||||||| |||||||||||||  ||||| ||||| | || |||| ||| ||||||| ||||||||    
T  129389 atttaaaggactcaaacggactttttattaattatgggaccaaagtgataccaaaaaat-aagttaagggacgaaaataacaattaag 129475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 123512 - 123426
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaa-aaattaaacttaaaggatgaaaatagcaattaag 238  Q
    ||||||||||||||| | |||||||||||| ||||||||||||| | |||| || |||||  | |||| ||| ||||||||||||||||    
T  123512 atttaaaggactcaagcggactttttattaattatgggaccaaagcaataccaagaaatt--agttaagggacgaaaatagcaattaag 123426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 134388 - 134302
Alignment:
Q  151 atttaaaggactcaaacagactttttattacttatgggaccaaatcgatactaa-aaattaaacttaaaggatgaaaatagcaattaag 238  Q
    ||||||||||||||| | |||||||||||| ||||||||||||| | |||| || |||||  | |||| ||| ||||||||||||||||    
T  134388 atttaaaggactcaagcggactttttattaattatgggaccaaagcaataccaagaaatt--agttaagggacgaaaatagcaattaag 134302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 18508814 - 18508851
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatac 201  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  18508814 aaacagactttttattatttatgggaccaaatcgatac 18508851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 35463855 - 35463892
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatac 201  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  35463855 aaacagactttttattacttatgggaccaaagcgatac 35463892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 1983541 - 1983582
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatactaaa 205  Q
    |||| ||| |||||||||||||||||||||| ||||||||||    
T  1983541 aaacggaccttttattacttatgggaccaaagcgatactaaa 1983582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 17115620 - 17115652
Alignment:
Q  173 ttttattacttatgggaccaaatcgatactaaa 205  Q
    |||||||||||||||||||||| ||||||||||    
T  17115620 ttttattacttatgggaccaaaacgatactaaa 17115652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 26049 - 26001
Alignment:
Q  153 ttaaaggactcaaacagactttttattacttatgggaccaaatcgatac 201  Q
    |||| ||||| ||||| ||||||||||||||||||||||||| ||||||    
T  26049 ttaagggacttaaacaaactttttattacttatgggaccaaagcgatac 26001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 26255 - 26296
Alignment:
Q  164 aaacagactttttattacttatgggaccaaatcgatactaaa 205  Q
    |||| ||| |||||||||||||||||||||| ||||||||||    
T  26255 aaacggaccttttattacttatgggaccaaaacgatactaaa 26296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2010 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold2010
Description:

Target: scaffold2010; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 983 - 926
Alignment:
Q  178 ttacttatgggaccaaatcgatactaaaaattaaacttaaaggatgaaaatagcaattaa 237  Q
    ||||||||||||||||| ||||||||||||  |||||||||  |  ||||||||||||||    
T  983 ttacttatgggaccaaaacgatactaaaaa--aaacttaaaaaacaaaaatagcaattaa 926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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