View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_66 (Length: 317)
Name: NF20869_low_66
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_66 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 3172101 - 3171814
Alignment:
| Q |
19 |
atttttgtccgaggttgattcacatacctacatttccaaaacttgacaaaacattgagtttaactcattctagtagtgtgaaggcactggaagcaacttt |
118 |
Q |
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| T |
3172101 |
atttttgtccgaggttgagtcacatacctacatttccaaaacttgacaaaacattgagtttaactcattctagtagtgtgaaggcactggaagcaacttt |
3172002 |
T |
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| Q |
119 |
aaacatggtagattcaaattcttcgattgaagtccttcctctttcgttgataaaagagttgaaacttgtggatgttgatctcgatgtgaaaaaattccca |
218 |
Q |
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| T |
3172001 |
aaacatggtagattcaaattcttcgattgaagtccttcctctttcattgataaaagagttgaaacttgtggatgttgatctcgatgtgaaaaaattccca |
3171902 |
T |
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| Q |
219 |
aagaattggatgcaaaatctgacttctctgaagcatctagtttttggtcggcttccaagtcaaacatttcaggaaatccaaatttcat |
306 |
Q |
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| T |
3171901 |
aagaattggatgcaaaatctgacttctctgaagcatctagtttttggtcatcttccaagtcaaacatttcaggaaatccaaatttcat |
3171814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 3004340 - 3004383
Alignment:
| Q |
204 |
gtgaaaaaattcccaaagaattggatgcaaaatctgacttctct |
247 |
Q |
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| T |
3004340 |
gtgaaaaaactcccaaagaattggttgcaaaatctcacttctct |
3004383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 3140285 - 3140231
Alignment:
| Q |
202 |
atgtgaaaaaattcccaaagaattggatgcaaaatctgacttctctgaagcatct |
256 |
Q |
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| T |
3140285 |
atgtgaaaaaactcccagaggattggttgcaaattctgacttctctcaagcatct |
3140231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 295
Target Start/End: Original strand, 7161476 - 7161570
Alignment:
| Q |
201 |
gatgtgaaaaaattcccaaagaattggatgcaaaatctgacttctctgaagcatctagtttttggtcggcttccaagtcaaacatttcaggaaat |
295 |
Q |
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| T |
7161476 |
gatgtaaaaaaatacctgaaggattgggtgcaaaatctgacttccctcgagcatcttgtttttatgaagcttccaagtcgaacatttcaggaaat |
7161570 |
T |
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