View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_68 (Length: 315)
Name: NF20869_low_68
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 52 - 296
Target Start/End: Original strand, 29437094 - 29437351
Alignment:
| Q |
52 |
tttgagtggaaaaaccattcacgagttggtacgtacgggttcagatgctccaaaacgaattcaaattaaggcaattggagttatctatcc---------- |
141 |
Q |
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| T |
29437094 |
tttgagtggaaaaaccattcacgagttggtacgtacgggttcagatgctccaaaacgaattcaaattaaggcaattggagttatctatcccactaggatt |
29437193 |
T |
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| Q |
142 |
---aaaattctccattaacatgatcaacgacaataaacagtaaaaggnnnnnnngtttgtggaaggcaagaaatcgcaaagcaaacaacccctcgaggga |
238 |
Q |
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| T |
29437194 |
tccaaaattctccattaacatgatcaacgacaataaacagtaaaaggaaaaaaagtttgtggaaggcaagaaatcgcaaagcaaacaacccctcgaggga |
29437293 |
T |
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| Q |
239 |
aaacgggggaataacaatggtcccaaaattaactggaataagagccaaatataactgg |
296 |
Q |
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| T |
29437294 |
aaacgggggaataacaatggtcccaaaattacctggaataagagccacaaataactgg |
29437351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 29437026 - 29437070
Alignment:
| Q |
11 |
ttattctcttatcttggaattgtgaaagtgacttgtttatgtttg |
55 |
Q |
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| T |
29437026 |
ttattctcttatcttggaattgtgaaagtgacttgtttatgtttg |
29437070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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