View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_69 (Length: 314)
Name: NF20869_low_69
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_69 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 39469407 - 39469685
Alignment:
| Q |
14 |
gagatgaacacattgataggcttgatggaattggaccagagaaagcattgttgaaaagtattagcttggtaagattgcccttgctgcaaagagtttctgg |
113 |
Q |
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| T |
39469407 |
gagaagaacacattgataggcttgatggaattggaccagagaaagcattgttgaaaagtattagcttggtaagattgcccttgctgcaaagagtttctgg |
39469506 |
T |
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| Q |
114 |
aatctctccagagagtgaattggatgatacatccaaccattgcaatggtgaattcttgccgaggttactaggcaatggacctgataatgaattgttccat |
213 |
Q |
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| T |
39469507 |
aatctctccagagagtgaattggatgatacatccaaccattgcaatggtgaattctcgccgaggttactaggcaatggacctgataatgaattgttccat |
39469606 |
T |
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| Q |
214 |
agctcaaaaacctccaattgaggcaaatttccaagtccagaaggaacaaaaccagataactggtttcccatgaagttca |
292 |
Q |
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| T |
39469607 |
agctcaaaaacctccaattgaggcaaatttccaagtccagaaggaacaaaaccagataactggtttcccatgaagttca |
39469685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 28 - 292
Target Start/End: Complemental strand, 30088530 - 30088266
Alignment:
| Q |
28 |
gataggcttgatggaattggaccagagaaagcattgttgaaaagtattagcttggtaagattgcccttgctgcaaagagtttctggaatctctccagaga |
127 |
Q |
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| T |
30088530 |
gataggcttgttggaatcggacccttgaaggcattgttgaaaagtataagcttggtgagatttcccttagtgcaaagagtttcaggaatctcgccggaga |
30088431 |
T |
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| Q |
128 |
gtgaattggatgatacatccaaccattgcaatggtgaattcttgccgaggttactaggcaatggacctgataatgaattgttccatagctcaaaaacctc |
227 |
Q |
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| T |
30088430 |
gtgaattggacgatacatccaaccactgcagcggcgaattcttgccgaggtctctaggcaatggccctgacaaagaattgttccatagctcaagcacctc |
30088331 |
T |
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| Q |
228 |
caattgaggcaaatttccaagtccagaaggaacaaaaccagataactggtttcccatgaagttca |
292 |
Q |
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| T |
30088330 |
tagttgaggcaaatctccaaggccagaaggtacaggaccagatagcttgttcctcataaagttca |
30088266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 44261990 - 44262096
Alignment:
| Q |
20 |
aacacattgataggcttgatggaattggaccagagaaagcattgttgaaaagtattagcttggtaagattgcccttgctgcaaagagtttctggaatctc |
119 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||| | ||||||||||| | | || ||||| || | ||||| |||||||||| |||||| |
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| T |
44261990 |
aacacattggtagtcttgatggaattggaccagagaaagcaatattgaaaagtatcaatgttgtgagatttccttggctgccaagagtttctttaatctc |
44262089 |
T |
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| Q |
120 |
tccagag |
126 |
Q |
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||||||| |
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| T |
44262090 |
tccagag |
44262096 |
T |
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