View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_7 (Length: 677)
Name: NF20869_low_7
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 18 - 622
Target Start/End: Complemental strand, 45566096 - 45565492
Alignment:
| Q |
18 |
atgaacgaaccgggaagaaagctccaaagtaagtatcaagtttccattgatgaatgtcgggatgagttagatagatttaggggcagcgtgcaagcttccc |
117 |
Q |
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| T |
45566096 |
atgaacgaacggggaagaaagctccaaagtaagtatcgagtttccattgatgaatgtcgggatgagttagagagatttaggggcagcgtgcaagcttccc |
45565997 |
T |
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| Q |
118 |
aaattgggcgctctaaggaggtacatatttgaatgggaggattattggcacaagcagaagcattttggaaacaaatagcaaaggtgatttggcttaagga |
217 |
Q |
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| T |
45565996 |
aaattgcgcgctctaaggaggtacatatttgaatgagaggattattggcacaagcagaagcattttggaaacaaatagcaaaggtgatttggcttaagga |
45565897 |
T |
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| Q |
218 |
tggtgacaccaatgcgcgattctttcaagccatggcgagtgcaaagagatgatgcaatacttttacaaacttgaagaaagatgataggactttggttgtg |
317 |
Q |
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| T |
45565896 |
tggtgataccaatgcgcgattctttcaagccatggcgagtgcaaagagatgatgcaatacttttacaaacttgaagaaagatgataggactttggttgtg |
45565797 |
T |
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| Q |
318 |
gcgcaacatgaactttacgtggttgctagctcctattttatgaattctgcgtgcaaagagatgatgttgggcgaatggatgagaatgtggggtttgcgaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
45565796 |
gcgcaacatgaactttacgtggttgctagctcctattttatgaattctgcgtgcaaagagatgatgttcggtgaatggatgagaatgtggggtttgcgaa |
45565697 |
T |
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| Q |
418 |
ttctctaacagatcaaagtttttctttgaagtgtgcttggaggtattcttcctactcttatgagacttcaagagagaggagttctatgttcaaatggatg |
517 |
Q |
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| T |
45565696 |
ttctgtaacagatcaaagtttttctttgaagtgtgcttggaggtattcttcctactcttatgagacttcaaaagagaggagttccatgttcaaatggatg |
45565597 |
T |
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| Q |
518 |
tccccattgtgaaacaaactatgagaacgattggatgtaaagcggcaaaacaaatatggtgcgaggctgatctgtgggattcagttagcagaggcgcagg |
617 |
Q |
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| T |
45565596 |
tccccattgtgaaacaaactatgagaacgattggatgtaaagcggcaaaacaaatatggtgcgaggctgatctgtgggattcagttagcagaggcgcagg |
45565497 |
T |
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| Q |
618 |
tgctg |
622 |
Q |
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| T |
45565496 |
tgctg |
45565492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 8179449 - 8179388
Alignment:
| Q |
162 |
ttggcacaagcagaagcattttggaaacaaatagcaaaggtgatttggcttaaggatggtga |
223 |
Q |
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| T |
8179449 |
ttggcacaagaagaagcgttttggaagcaaagagctaaggtgatttggctgaaggatggtga |
8179388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 519 - 551
Target Start/End: Original strand, 45286940 - 45286972
Alignment:
| Q |
519 |
ccccattgtgaaacaaactatgagaacgattgg |
551 |
Q |
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| T |
45286940 |
ccccattgtgaaacaaactacgagaacgattgg |
45286972 |
T |
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