View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_70 (Length: 313)
Name: NF20869_low_70
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 42089638 - 42089348
Alignment:
| Q |
1 |
tgctgcaacaaacggtcccttctgaattactagcattttctaaaatatcttggcttttcaa-caaacaaaagagttggtcctaagctcaactttgtggac |
99 |
Q |
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||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
42089638 |
tgctgcaacaaacagttcattctgaattactagcattttctaaaatatcttggcttttcaagcagacaaaagagttggtcctaagctcaactttgtggac |
42089539 |
T |
|
| Q |
100 |
actacactacaggtacaaacaaagttgaactagctactgaaattaaaggcgcaaaaaataaattggtctctacttcatctttcattttt-attacct--t |
196 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | |
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| T |
42089538 |
actaca-----ggtacaaacaatgttgaactagctactgaaattaaaggcgcaaaaaataaattggtctctacttcatctttctttttttattacctaat |
42089444 |
T |
|
| Q |
197 |
taaatcttcgttctaaactaaatttattctagttgtatgagttagaaaagttatcatataaatttataattaggaatggagacaaatgcaattcct |
292 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
42089443 |
taaatcttcgttctacactaaatttattctagttgtatgagttagaaaagttatcatataagtttataattaggaatggtgacaaatgcaattcct |
42089348 |
T |
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