View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_74 (Length: 303)
Name: NF20869_low_74
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_74 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 44704508 - 44704797
Alignment:
| Q |
11 |
caaaaatattcacaagttattctcgttttcatagcatcaatcttgactgataattgtacaaaaaatccttgtaaataattcattggttttttcttagatt |
110 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44704508 |
caaaaatattcacaagttattctcgttttcatggcatcaatcttgactgataattgtacaaaaaatccttgtaaatagttcattggttttttcttagatt |
44704607 |
T |
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| Q |
111 |
attctcacatgaaacaagtaattacataagtctagtaattagtgtatcattggtttaaagggttcattcttataattacataagtct------agtattt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | | | ||||| |
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| T |
44704608 |
attctcacatgaaacaagtaattacataagtctagtaattagtgtatcattggtttaaagggttcattcttataaattcatatgaatattataattattt |
44704707 |
T |
|
| Q |
205 |
ttacgttcataagttagtgatattaatgcaataccaggaagatccactacaagataatggccagcagagtcctctgtccatgcagaatta |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44704708 |
ttacgttcataagttagtgatattaatgcaataccaggaagatccactacaagataatgggcagcagagtcctctgtccatgcagaatta |
44704797 |
T |
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