View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_77 (Length: 285)
Name: NF20869_low_77
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 33112378 - 33112634
Alignment:
| Q |
1 |
cgctgtctcattatatataaatattttgcatatgatccaaacggtggtttgtttctcaatttccaaagaaccaattcaccac---caccacctcaacctc |
97 |
Q |
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| T |
33112378 |
cgctctctcattatatataaatattttgcatatgatccaaacggtggtttgtttctcaatttccaaagaaccaattcaccacaaccaccacctcaacctc |
33112477 |
T |
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| Q |
98 |
tttcacaatggaaggtggagtacataagcctgatatctcagcttttagagaatgtctttccctttcatggaaaaatccttatgtccttcgtcttgctttt |
197 |
Q |
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| T |
33112478 |
tttcaaaatggaaggtgaagtacataagcctgatatatcagcttttagagaatgtctttccctttcatggaaaaatccttatgtccttcgtcttgctttt |
33112577 |
T |
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| Q |
198 |
tctgctggtattggtggctttctctttggctacgatactggtaattacactacaacc |
254 |
Q |
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| T |
33112578 |
tctgctggtattggtggccttctctttggctacgacactggtaattacactacaacc |
33112634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 33110888 - 33110936
Alignment:
| Q |
178 |
atgtccttcgtcttgctttttctgctggtattggtggctttctctttgg |
226 |
Q |
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| T |
33110888 |
atgtccttcgacttgctttctctgctggtattggtggccttctctttgg |
33110936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 33110829 - 33110876
Alignment:
| Q |
105 |
atggaaggtggagtacataagcctgatatctcagcttttagagaatgt |
152 |
Q |
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| T |
33110829 |
atggaaggtggagtaccagaggctgatatctcagcttttagagaatgt |
33110876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 104 - 242
Target Start/End: Complemental strand, 21562911 - 21562773
Alignment:
| Q |
104 |
aatggaaggtggagtacataagcctgatatctcagcttttagagaatgtctttccctttcatggaaaaatccttatgtccttcgtcttgctttttctgct |
203 |
Q |
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| T |
21562911 |
aatggaaggaggagtacctgaagctgatgtatctgctttcagagaatgtttgtctctatcatggaaaaatccttatgttcttcgtcttgctttctctgct |
21562812 |
T |
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| Q |
204 |
ggtattggtggctttctctttggctacgatactggtaat |
242 |
Q |
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| T |
21562811 |
ggaattggtggttttctctttggctatgatactggtaat |
21562773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 21496836 - 21496724
Alignment:
| Q |
129 |
gatatctcagcttttagagaatgtctttccctttcatggaaaaatccttatgtccttcgtcttgctttttctgctggtattggtggctttctctttggct |
228 |
Q |
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| T |
21496836 |
gatatgtctgctttcagagaatgtttatctctatcatggaaaaatccttatgttcttcgtcttgctttttctgctggaattggtggccttctttttggct |
21496737 |
T |
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| Q |
229 |
acgatactggtaa |
241 |
Q |
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| T |
21496736 |
atgatactggtaa |
21496724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 51032218 - 51032287
Alignment:
| Q |
162 |
tcatggaaaaatccttatgtccttcgtcttgctttttctgctggtattggtggctttctctttggctacg |
231 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |||||||||| |
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| T |
51032218 |
tcatggaaaaatccttatgttcttcgtcttgctttttctgctggaattggtggacttctttttggctacg |
51032287 |
T |
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