View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20869_low_8 (Length: 676)
Name: NF20869_low_8
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 11 - 641
Target Start/End: Complemental strand, 42362459 - 42361829
Alignment:
| Q |
11 |
cataggtagtagaatgttgtaatcaagattgcaatcacggaggcctttttcatggtcttgttttctgctggaggagactctagagtgtcctttgttcaat |
110 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42362459 |
cataggtagaagaatgttgtaatcaagattgcaatcatggaggcctttttcatggtcttgttttctgctggaggagactctagagtgtcctttgttcaat |
42362360 |
T |
|
| Q |
111 |
atnnnnnnnnnnnnngagttcaatgccttaagttaagcctttaactctgtatagtatatgaaccactgatacagacacaacacataacactgtcacgtca |
210 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42362359 |
ataaaaaaagaaaaagagttcaatgctttaagttaagcctttaactctgtatagtatatgaaccactgatacagacacaacacataacactgacacgtca |
42362260 |
T |
|
| Q |
211 |
acaccaaatataacttgagaaaataaaagtatttcaatgtaactcattgtgtcggtatcgaacattgatatatgtcggacacatttggaaaaataaaggg |
310 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42362259 |
acaccaagtataacttgagaaaataaaagtatttcaatgtaactcattgtgtcggtatcgaacattgatatatgtcggacacatttggaataataaaggg |
42362160 |
T |
|
| Q |
311 |
tacctgtatctcaaggaggatggtagtgtagggatatgcaaaagcaatatcaccaagtgcttggaacactaaccataacttgtctgcaatatttgaagct |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42362159 |
tacctgtatctcaaggaggatggtagtgtagggatatgcaaaagcaatatcaccaagtgcttggaacactaaccataacttgtctgcaatatttgaagct |
42362060 |
T |
|
| Q |
411 |
ggtactccagctacactccccataattcttccattttctacaagtttaaccatgagtcttaggagccattgccttgttggagggactaacttgattggag |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42362059 |
ggtactccagctacactccccataattcttccattttctacaagtttaaccatgagtcttaggagccattgccttgttggagggactaacttgattggag |
42361960 |
T |
|
| Q |
511 |
ttctttaattcaagggaatactttgctatttcgtaaattcgatgactaaattcatcgacgcttacgtactgaaatgctgatttactctattctagactta |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42361959 |
ttctttaattcaagggaatactttgctatttcgtaaatttgatgactaaattcattgacgcttacatactgaaatgctgatttactctattctagactta |
42361860 |
T |
|
| Q |
611 |
ctaatgcatcatcttgatgcggctaaaacaa |
641 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
42361859 |
ctaatgcatcatcttgatgcggctaaaacaa |
42361829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 24379244 - 24379146
Alignment:
| Q |
11 |
cataggtagtagaatgttgtaatcaagattgcaatcacggaggcctttttcatggtcttgttttctgctggaggagactctagagtgtcctttgttcaa |
109 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||| |||| |||||||||||||||||| | || |||| |||||||||||||||||||||||||| |||| |
|
|
| T |
24379244 |
catatgtagaagaatgttgtaatggagattgccatcatggaggcctttttcatggtttgattctctggtggaggagactctagagtgtcctttgctcaa |
24379146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 24414303 - 24414211
Alignment:
| Q |
9 |
agcataggtagtagaatgttgtaatcaagattgcaatcacggaggcctttttcatggtcttgttttctgctggaggagactctagagtgtcct |
101 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| || ||| ||||||||||| || | || |||| ||||||||||||||| ||||||| |
|
|
| T |
24414303 |
agcataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttcattgtttgattctctggtggaggagactctagtgtgtcct |
24414211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 24419658 - 24419750
Alignment:
| Q |
9 |
agcataggtagtagaatgttgtaatcaagattgcaatcacggaggcctttttcatggtcttgttttctgctggaggagactctagagtgtcct |
101 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| || ||| ||||||||||| || | || |||| ||||||||||||||| ||||||| |
|
|
| T |
24419658 |
agcataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttcattgtttgattctctggtggaggagactctagtgtgtcct |
24419750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 24402048 - 24401950
Alignment:
| Q |
11 |
cataggtagtagaatgttgtaatcaagattgcaatcacggaggcctttttcatggtcttgttttctgctggaggagactctagagtgtcctttgttcaa |
109 |
Q |
| |
|
|||| |||| ||||||||||||| | |||| | || ||||||||||||||||| | || || |||||||||||||| ||||||||||||| |||| |
|
|
| T |
24402048 |
catatgtagaagaatgttgtaatgagaattgacaccagggaggcctttttcatggattgattctccgctggaggagactcgagagtgtcctttgctcaa |
24401950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 490 - 549
Target Start/End: Complemental strand, 14013916 - 14013857
Alignment:
| Q |
490 |
gagggactaacttgattggagttctttaattcaagggaatactttgctatttcgtaaatt |
549 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| |||||| || ||||||||||| |||||| |
|
|
| T |
14013916 |
gagggactaaattgattggtgttctttaatttaagggattattttgctatttcataaatt |
14013857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University