View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_81 (Length: 282)
Name: NF20869_low_81
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_81 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 45652808 - 45653064
Alignment:
| Q |
19 |
ggtgtttattctcccaacctcaatttcaactctagtatcccaacacatggccataaaaagatggttttttgtgttctttccaactttcattatgaggtat |
118 |
Q |
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| T |
45652808 |
ggtgtttattctctcaacctcaatttcaactctagtatcccaacacatggccataaaaagatggttttttgtgttctttccaactttcattatgaggtat |
45652907 |
T |
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| Q |
119 |
ggaaattgtggtgagaggaattactggtttgcaattattatgttgttgacaaaaccttccaataggaattcacctataatagtccaagatggtatgttac |
218 |
Q |
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| T |
45652908 |
ggaaattgtggtgagaggaattattggtttgcaattattatgttgttgacaaaaccttccaataggaattcacctataatagtccaagatggtatgttac |
45653007 |
T |
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| Q |
219 |
gatggattgctaatgaagaaaagtgaagggtacccataggccctatgtcctttgctt |
275 |
Q |
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| T |
45653008 |
gatggattgctaatgaagaaaagtgaagggtacccataggccctatgtcctttgctt |
45653064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 45645080 - 45645174
Alignment:
| Q |
21 |
tgtttattctcccaacctc-aatttcaactctagtatcccaacacatggccataaaaagatggttttttgtgttctttccaactttcattatgag |
114 |
Q |
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| T |
45645080 |
tgtttattcttccaacttccaatttcaactctagtgtttcaacaaatggccatagaaagatggttatctctgttcttttcaaatttcattatgag |
45645174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 275
Target Start/End: Original strand, 45648516 - 45648631
Alignment:
| Q |
164 |
ttgacaaaaccttccaataggaattcacctataatagtccaagatggtatgtta-------cgatggattgctaatgaagaaaagtgaagggtacccata |
256 |
Q |
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| T |
45648516 |
ttgacaaaaccttgcaacaggaattcacctataatagtccaagattgtacgttatgatttttgatggattgctaacaaagaaaagtgaaaggcaccca-- |
45648613 |
T |
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| Q |
257 |
ggccctatgtcctttgctt |
275 |
Q |
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| T |
45648614 |
-cccctatgtcctttgctt |
45648631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 1193522 - 1193437
Alignment:
| Q |
164 |
ttgacaaaaccttccaataggaattcacctataatagtccaagatggtatgttacgatggattgctaatgaagaaaagtgaagggtaccc |
253 |
Q |
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| T |
1193522 |
ttgacaaaacttttcaataggaattcatctataatagtccaagatgatatcttacgacg--tt--taatgaagaaaagtgaagggtaccc |
1193437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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