View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_86 (Length: 278)
Name: NF20869_low_86
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_86 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 1670611 - 1670373
Alignment:
| Q |
18 |
atatacggtatcgtcaaaatgtcgaaaattaaaattgaaagttttttctttctgtaaattaaaattgaagatagcataatttggaatttttataatcata |
117 |
Q |
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| T |
1670611 |
atatatggtatcgtcaaaatgtcgaaaattgaaattgaaagtcttttcttactgtaaattaaaattgaagatagcataatttggaatttttataatcata |
1670512 |
T |
|
| Q |
118 |
aatttaaattcaatgattgaaaggaatagaaaggaaagatagagnnnnnnncattcgtaaataactgcaatggtaaagagatggtggagatctgcaatga |
217 |
Q |
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| T |
1670511 |
aatttaaattcaatgattgaaaggaatagaaaggaaacatagaggaaaaaacattcgtaaataactgcaatggcaaagagatggtggagatctgcaatga |
1670412 |
T |
|
| Q |
218 |
agaaaaatggatatatgaagaagaggaaagacaatagga |
256 |
Q |
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| T |
1670411 |
agaaagatggatgtatgaagaagaggaaagagaatagga |
1670373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 6815671 - 6815433
Alignment:
| Q |
18 |
atatacggtatcgtcaaaatgtcgaaaattaaaattgaaagttttttctttctgtaaattaaaattgaagatagcataatttggaatttttataatcata |
117 |
Q |
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| T |
6815671 |
atatatggtatcgtcaaaatgtcgaaaattgaaattgaaggttttttcttactgtaaattgaaattgaagatagcataatttggaatttttataatcata |
6815572 |
T |
|
| Q |
118 |
aatttaaattcaatgattgaaaggaatagaaaggaaagatagagnnnnnnncattcgtaaataactgcaatggtaaagagatggtggagatctgcaatga |
217 |
Q |
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| T |
6815571 |
aatttaaattcaatgattgaaaggaatagaaaggaaacatagtggaaaaaacattcgtaaataactgcaatggcaaagagatggtggatatctacaatga |
6815472 |
T |
|
| Q |
218 |
agaaaaatggatatatgaagaagaggaaagacaatagga |
256 |
Q |
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| T |
6815471 |
agaaagatggatgtatgaagaagaggaaagagaatagga |
6815433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 53648602 - 53648832
Alignment:
| Q |
18 |
atatacggtatcgtcaaaatgtcgaaaattaaaattgaaagttttttctttctgtaaattaaaattgaagatagcataatttggaatttttataatcata |
117 |
Q |
| |
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||||| |||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53648602 |
atatatggtatcgtcaaaatgtcgaaaa------ttgaaagttttttgttattgtaaattaaaattgaagatagcataatttggaatttttataatcata |
53648695 |
T |
|
| Q |
118 |
aatttaaattcaatgattgaaaggaatagaaaggaaagatagagnnnnnnncattcgtaaataactgcaatggtaaagagatggtggagatctgcaatga |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
53648696 |
aatttaaattcaatgattgaaaggaataaaaaggaaacatagaggaaaaaacattcgtaaataactgcaatggcaaagagatggtggggatctgcaatga |
53648795 |
T |
|
| Q |
218 |
agaaaaatggatatatgaagaagaggaaagacaatag |
254 |
Q |
| |
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|
| T |
53648796 |
agaaagatgaatgtatgaagaagaggaaagacaatag |
53648832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 10670523 - 10670637
Alignment:
| Q |
31 |
tcaaaatgtcgaaaattaaaattgaaagttttttctttctgtaaattaaaattgaagatagcataat-ttggaat-ttttataatcataaatttaaattc |
128 |
Q |
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|||| |||| ||||||| ||||| || ||||||| || |||||||| ||||||||||||||||| | || |||| |||| |||||| | ||| ||||| |
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| T |
10670523 |
tcaacatgttgaaaattgaaattaaaggtttttttttgttgtaaattgaaattgaagatagcatactctttgaatcttttgcaatcatgattttcaattc |
10670622 |
T |
|
| Q |
129 |
aatgattgaaaggaa |
143 |
Q |
| |
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||||||| ||||||| |
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| T |
10670623 |
aatgatttaaaggaa |
10670637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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