View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20869_low_95 (Length: 259)
Name: NF20869_low_95
Description: NF20869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20869_low_95 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 1251073 - 1251237
Alignment:
| Q |
1 |
caaaaaattatcatatgaacatgagatacatcagatgtaatatcaaatgaccaattcaaagattaaataattgatataaggtataaagtatgattcatga |
100 |
Q |
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| T |
1251073 |
caaaaaattatcatatgaacatgagatccatcagatgtaatatcaaatgaccaattcaaagattaaataattgatataaggtataaagtatgattcatga |
1251172 |
T |
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| Q |
101 |
tggtatnnnnnnnntgtatgattcgtgtttatttaaacttagatacaagataccatattgaagat |
165 |
Q |
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| T |
1251173 |
tggtataaaaaaaatgtatgattcgtgtttatttaaacttagatacagtataccatattgaagat |
1251237 |
T |
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Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 1250814 - 1250732
Alignment:
| Q |
159 |
tgaagattcatagccttttgtataaataacatttgtactatcaatcattttaattgtttaatattaattagtagggttactca |
241 |
Q |
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| T |
1250814 |
tgaagattcatagccttttgtataaataacatttgtactatcaatcattttaattgtttaatattaattagtagggttactca |
1250732 |
T |
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